Mercurial > repos > lsong10 > psiclass
view PsiCLASS-1.0.2/samtools-0.1.19/misc/r2plot.lua @ 0:903fc43d6227 draft default tip
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author | lsong10 |
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date | Fri, 26 Mar 2021 16:52:45 +0000 |
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#!/usr/bin/env luajit function string:split(sep, n) local a, start = {}, 1; sep = sep or "%s+"; repeat local b, e = self:find(sep, start); if b == nil then table.insert(a, self:sub(start)); break end a[#a+1] = self:sub(start, b - 1); start = e + 1; if n and #a == n then table.insert(a, self:sub(start)); break end until start > #self; return a; end function io.xopen(fn, mode) mode = mode or 'r'; if fn == nil then return io.stdin; elseif fn == '-' then return (mode == 'r' and io.stdin) or io.stdout; elseif fn:sub(-3) == '.gz' then return (mode == 'r' and io.popen('gzip -dc ' .. fn, 'r')) or io.popen('gzip > ' .. fn, 'w'); elseif fn:sub(-4) == '.bz2' then return (mode == 'r' and io.popen('bzip2 -dc ' .. fn, 'r')) or io.popen('bgzip2 > ' .. fn, 'w'); else return io.open(fn, mode) end end local eps = {}; function eps.func(fp) fp = fp or io.stdout fp:write("/C { dup 255 and 255 div exch dup -8 bitshift 255 and 255 div 3 1 roll -16 bitshift 255 and 255 div 3 1 roll setrgbcolor } bind def\n") fp:write("/L { 4 2 roll moveto lineto } bind def\n") fp:write("/LX { dup 4 -1 roll exch moveto lineto } bind def\n") fp:write("/LY { dup 4 -1 roll moveto exch lineto } bind def\n") fp:write("/LS { 3 1 roll moveto show } bind def\n") fp:write("/RS { dup stringwidth pop 4 -1 roll exch sub 3 -1 roll moveto show } bind def\n") fp:write("/B { 4 copy 3 1 roll exch 6 2 roll 8 -2 roll moveto lineto lineto lineto closepath } bind def\n") end function eps.font(ft, size, fp) fp = fp or io.stdout fp:write(string.format('/FS %d def\n', size)); fp:write('/FS4 FS 4 div def\n'); fp:write('/' .. ft .. ' findfont FS scalefont setfont\n'); end local scale = 8; if #arg == 0 then print("Usage: r2plot.lua <in.txt>"); os.exit(1) end local fp = io.xopen(arg[1]); local n = tonumber(fp:read()); print('%!PS-Adobe-3.0 EPSF-3.0'); print('%%' .. string.format('BoundingBox: -%d -%d %.3f %.3f\n', 10*scale, scale, (n+1)*scale, (n+1)*scale)); print(string.format('%.3f setlinewidth', scale)); print(string.format('/plot { setgray moveto 0 %d rlineto } def', scale)); print(string.format('/plothalf { setgray moveto 0 %.2f rlineto } def', scale/2)); eps.func(); eps.font('Helvetica', scale-1); local i = 1; for l in fp:lines() do local t = l:split('\t'); print(string.format("%d %d FS4 add (%s) RS", (i-1)*scale-2, (i-1)*scale, t[1])); for j = 2, #t do if tonumber(t[j]) > 0.01 then print(string.format('%.2f %.2f %.2f plot stroke', (i-1+.5)*scale, (j-2)*scale, 1.-t[j])); end end i = i + 1; end for j = 1, 21 do print(string.format('%.2f %.2f %.2f plothalf stroke', -8*scale, (j-1) * scale/2, 1.-(j-1)/20)); end print('showpage');