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comparison galaxy_stubs/Validator.xml @ 2:605370bc1def draft default tip

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author luis
date Tue, 12 Jul 2016 12:33:33 -0400
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1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [QuEasy (QSAR)]-->
4 <tool id="Validator" name="Validator" version="1.1.0">
5 <description>evaluate quality of a QSAR model </description>
6 <macros>
7 <token name="@EXECUTABLE@">Validator</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="stdio"/>
11 <expand macro="requirements"/>
12 <command>Validator
13
14 #if $param_i:
15 -i $param_i
16 #end if
17 #if $param_dat:
18 -dat $param_dat
19 #end if
20 #if $param_o:
21 -o $param_o
22 #end if
23 #if $param_type:
24 -type
25 #if " " in str($param_type):
26 "$param_type"
27 #else
28 $param_type
29 #end if
30 #end if
31 </command>
32 <inputs>
33 <param name="param_i" type="data" format="mod" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input mod-file" help="(-i) "/>
34 <param name="param_dat" type="data" format="dat" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="data-file" help="(-dat) "/>
35 <param name="param_type" type="select" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="feature-selection type" help="(-type) ">
36 <option value="cross validation">cross validation</option>
37 <option value=" bootstrapping"> bootstrapping</option>
38 <option value=" response permutation"> response permutation</option>
39 <option value=" evaluate fit to test data"> evaluate fit to test data</option>
40 </param>
41 </inputs>
42 <expand macro="advanced_options"/>
43 <outputs>
44 <data name="param_o" format="txt"/>
45 </outputs>
46 <help>Validator evaluates the quality of a QSAR model.
47
48 The validation technique to be used for this can selected by '-type'. As input this tools need a model-file as generate by InputReader or FeatureSelector and a data-file generated by InputReader containing the prediction data set. Note that the latter must contain response values so that predictions done by the supplied model can be compared to those values by the validation method.
49
50 </help>
51 </tool>