Mercurial > repos > luis > ball
comparison galaxy_stubs/FeatureSelector.xml @ 2:605370bc1def draft default tip
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| author | luis |
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| date | Tue, 12 Jul 2016 12:33:33 -0400 |
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| 1:31013b5cd066 | 2:605370bc1def |
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| 1 <?xml version='1.0' encoding='UTF-8'?> | |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
| 3 <!--Proposed Tool Section: [QuEasy (QSAR)]--> | |
| 4 <tool id="FeatureSelector" name="FeatureSelector" version="1.1.0"> | |
| 5 <description>run feature-selection on a QSAR model</description> | |
| 6 <macros> | |
| 7 <token name="@EXECUTABLE@">FeatureSelector</token> | |
| 8 <import>macros.xml</import> | |
| 9 </macros> | |
| 10 <expand macro="stdio"/> | |
| 11 <expand macro="requirements"/> | |
| 12 <command>FeatureSelector | |
| 13 | |
| 14 #if $param_i: | |
| 15 -i $param_i | |
| 16 #end if | |
| 17 #if $param_dat: | |
| 18 -dat $param_dat | |
| 19 #end if | |
| 20 #if $param_o: | |
| 21 -o $param_o | |
| 22 #end if | |
| 23 #if $param_type: | |
| 24 -type | |
| 25 #if " " in str($param_type): | |
| 26 "$param_type" | |
| 27 #else | |
| 28 $param_type | |
| 29 #end if | |
| 30 #end if | |
| 31 </command> | |
| 32 <inputs> | |
| 33 <param name="param_i" type="data" format="mod" optional="False" value="<class 'CTDopts.CTDopts._Null'>" label="input mod-file" help="(-i) "/> | |
| 34 <param name="param_dat" type="data" format="dat" optional="False" value="<class 'CTDopts.CTDopts._Null'>" label="data-file" help="(-dat) "/> | |
| 35 <param name="param_type" type="select" optional="False" value="<class 'CTDopts.CTDopts._Null'>" label="feature-selection type" help="(-type) "> | |
| 36 <option value="remove_correlated">remove_correlated</option> | |
| 37 <option value=" forward_selection"> forward_selection</option> | |
| 38 <option value=" backward_selection"> backward_selection</option> | |
| 39 <option value=" stepwise_selection"> stepwise_selection</option> | |
| 40 <option value=" twinscan"> twinscan</option> | |
| 41 <option value=" removeLowResponseCorrelation"> removeLowResponseCorrelation</option> | |
| 42 </param> | |
| 43 </inputs> | |
| 44 <expand macro="advanced_options"/> | |
| 45 <outputs> | |
| 46 <data name="param_o" format="mod"/> | |
| 47 </outputs> | |
| 48 <help>FeatureSelector runs a feature-selection for a given QSAR model. | |
| 49 | |
| 50 The type of feature-selection to be done is specified by '-type'. Input of this tool is a data file as generated by InputReader containing the training data for feature-selection and a QSAR model file as generated by ModelCreator (or this tool itself). Note that you can apply several feature-selection methods in succession by using the output of one call of this tool as input for the next call. | |
| 51 Model- and kernel-parameters (if any) will be automatically optimized by cross-validation after applying the desired feature-selection. | |
| 52 | |
| 53 Output of this tool is a model-file that can be used by other QuEasy tools (e.g. Validator). | |
| 54 | |
| 55 </help> | |
| 56 </tool> |