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comparison galaxy_stubs/InputPartitioner.xml @ 2:605370bc1def draft default tip

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author luis
date Tue, 12 Jul 2016 12:33:33 -0400
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1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [QuEasy (QSAR)]-->
4 <tool id="InputPartitioner" name="InputPartitioner" version="1.1.0">
5 <description>split QSAR data set </description>
6 <macros>
7 <token name="@EXECUTABLE@">InputPartitioner</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="stdio"/>
11 <expand macro="requirements"/>
12 <command>InputPartitioner
13
14 #if $param_i:
15 -i $param_i
16 #end if
17 #if $param_o:
18 -o $param_o
19 #end if
20 #if $param_n:
21 -n $param_n
22 #end if
23 </command>
24 <inputs>
25 <param name="param_i" type="data" format="dat" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input data-file" help="(-i) "/>
26 <param name="param_n" type="integer" value="0" label="number of partitions" help="(-n) "/>
27 </inputs>
28 <expand macro="advanced_options"/>
29 <outputs>
30 <data name="param_o" format="dat"/>
31 </outputs>
32 <help>InputPartitioner partitions a given QSAR data set into n partitions with evenly distributed response values.
33 Thus, this tool can be useful as part of a nested validation pipeline.
34 Input is a data file as generated by InputReader.
35 Output will be written to n files postfixed '_TRAIN&lt;i&gt;.dat' and '_TEST&lt;i&gt;.dat', where &lt;i&gt; is the ID of the resp. partition. For each of these partitions, the training set contains only those compounds that were not selected for the resp. test set.
36
37 </help>
38 </tool>