Mercurial > repos > luis > ball
diff galaxy_stubs/FeatureSelector.xml @ 2:605370bc1def draft default tip
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author | luis |
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date | Tue, 12 Jul 2016 12:33:33 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxy_stubs/FeatureSelector.xml Tue Jul 12 12:33:33 2016 -0400 @@ -0,0 +1,56 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--Proposed Tool Section: [QuEasy (QSAR)]--> +<tool id="FeatureSelector" name="FeatureSelector" version="1.1.0"> + <description>run feature-selection on a QSAR model</description> + <macros> + <token name="@EXECUTABLE@">FeatureSelector</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>FeatureSelector + +#if $param_i: + -i $param_i +#end if +#if $param_dat: + -dat $param_dat +#end if +#if $param_o: + -o $param_o +#end if +#if $param_type: + -type + #if " " in str($param_type): + "$param_type" + #else + $param_type + #end if +#end if +</command> + <inputs> + <param name="param_i" type="data" format="mod" optional="False" value="<class 'CTDopts.CTDopts._Null'>" label="input mod-file" help="(-i) "/> + <param name="param_dat" type="data" format="dat" optional="False" value="<class 'CTDopts.CTDopts._Null'>" label="data-file" help="(-dat) "/> + <param name="param_type" type="select" optional="False" value="<class 'CTDopts.CTDopts._Null'>" label="feature-selection type" help="(-type) "> + <option value="remove_correlated">remove_correlated</option> + <option value=" forward_selection"> forward_selection</option> + <option value=" backward_selection"> backward_selection</option> + <option value=" stepwise_selection"> stepwise_selection</option> + <option value=" twinscan"> twinscan</option> + <option value=" removeLowResponseCorrelation"> removeLowResponseCorrelation</option> + </param> + </inputs> + <expand macro="advanced_options"/> + <outputs> + <data name="param_o" format="mod"/> + </outputs> + <help>FeatureSelector runs a feature-selection for a given QSAR model. + +The type of feature-selection to be done is specified by '-type'. Input of this tool is a data file as generated by InputReader containing the training data for feature-selection and a QSAR model file as generated by ModelCreator (or this tool itself). Note that you can apply several feature-selection methods in succession by using the output of one call of this tool as input for the next call. +Model- and kernel-parameters (if any) will be automatically optimized by cross-validation after applying the desired feature-selection. + +Output of this tool is a model-file that can be used by other QuEasy tools (e.g. Validator). + +</help> +</tool>