--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy_stubs/CalculateSolvationFreeEnergy.xml	Tue Jul 12 12:33:33 2016 -0400
@@ -0,0 +1,36 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--Proposed Tool Section: [ForceFields]-->
+<tool id="CalculateSolvationFreeEnergy" name="CalculateSolvationFreeEnergy" version="1.1.0">
+  <description>calculate solvation free energy of a protein using AMBER </description>
+  <macros>
+    <token name="@EXECUTABLE@">CalculateSolvationFreeEnergy</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>CalculateSolvationFreeEnergy
+
+#if $param_pdb:
+  -pdb $param_pdb
+#end if
+#if $param_epsilon_medium:
+  -epsilon_medium $param_epsilon_medium
+#end if
+#if $param_epsilon_vacuum:
+  -epsilon_vacuum $param_epsilon_vacuum
+#end if
+</command>
+  <inputs>
+    <param name="param_pdb" type="data" format="pdb" optional="False" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="input pdb file" help="(-pdb) "/>
+    <param name="param_epsilon_medium" type="float" value="0.0" label="dielectric constant in medium" help="(-epsilon_medium) "/>
+    <param name="param_epsilon_vacuum" type="float" value="1.0" label="dielectric constant in vacuum" help="(-epsilon_vacuum) "/>
+  </inputs>
+  <expand macro="advanced_options"/>
+  <outputs>
+    <data name="param_stdout" format="text" label="Output from stdout"/>
+  </outputs>
+  <help>This tool computes the solvation free energy of a pdb file using the Jackson-Sternberg approach (bonded energy using a force field and a non bonded energy (electrostatics only) by solving the Poisson-Boltzmann equation. Parameters are the dielectric constants for the medium (-epsilon_medium) and the vacuum (-epsilon_vacuum).
+
+</help>
+</tool>