Mercurial > repos > luis > ball
diff galaxy_stubs/PropertyModifier.xml @ 2:605370bc1def draft default tip
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author | luis |
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date | Tue, 12 Jul 2016 12:33:33 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxy_stubs/PropertyModifier.xml Tue Jul 12 12:33:33 2016 -0400 @@ -0,0 +1,83 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--Proposed Tool Section: [Preparation]--> +<tool id="PropertyModifier" name="PropertyModifier" version="1.1.0"> + <description>modify molecule property tags</description> + <macros> + <token name="@EXECUTABLE@">PropertyModifier</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>PropertyModifier + +#if $param_i: + -i $param_i +#end if +#if $param_o: + -o $param_o +#end if +#if $param_mode: + -mode + #if " " in str($param_mode): + "$param_mode" + #else + $param_mode + #end if +#end if +#if $param_name: + -name "$param_name" +#end if +#if $param_value: + -value "$param_value" +#end if +#if $param_new_name: + -new_name "$param_new_name" +#end if +#if $param_rm: + -rm $param_rm +#end if +</command> + <inputs> + <param name="param_i" type="data" format="mol2,sdf,drf" optional="False" value="<class 'CTDopts.CTDopts._Null'>" label="input file" help="(-i) "/> + <param name="param_mode" type="select" optional="False" value="<class 'CTDopts.CTDopts._Null'>" label="'delete', 'add' or 'rename' properties" help="(-mode) "> + <option value="add">add</option> + <option value=" rename"> rename</option> + <option value=" delete"> delete</option> + </param> + <param name="param_name" type="text" size="30" value="<class 'CTDopts.CTDopts._Null'>" label="property name ('all' will erase all properties if in delete-mode)" help="(-name) "> + <sanitizer> + <valid initial="string.printable"> + <remove value="'"/> + <remove value="""/> + </valid> + </sanitizer> + </param> + <param name="param_value" type="text" size="30" value="<class 'CTDopts.CTDopts._Null'>" label="property value (in case of prop. adding only)" help="(-value) "> + <sanitizer> + <valid initial="string.printable"> + <remove value="'"/> + <remove value="""/> + </valid> + </sanitizer> + </param> + <param name="param_new_name" type="text" size="30" value="<class 'CTDopts.CTDopts._Null'>" label="new property name (in case of renaming only)" help="(-new_name) "> + <sanitizer> + <valid initial="string.printable"> + <remove value="'"/> + <remove value="""/> + </valid> + </sanitizer> + </param> + <param name="param_rm" type="integer" min="0" max="1" optional="True" value="0" label="remove input file when finished" help="(-rm) "/> + </inputs> + <expand macro="advanced_options"/> + <outputs> + <data name="param_o" metadata_source="param_i" format="input"/> + </outputs> + <help>With this tools you can add, rename or delete molecule property tags. +These tags can for example contain information about scores, binding-free-energy, IDs or names for the resp. molecule. +The output of this tool is a molecule file in which the desired property tags have been added/renamed/deleted (as chosen). + +</help> +</tool>