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view galaxy_stubs/PDBDownload.xml @ 2:605370bc1def draft default tip
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author | luis |
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date | Tue, 12 Jul 2016 12:33:33 -0400 |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Get Data]--> <tool id="PDBDownload" name="PDBDownload" version="1.1.0"> <description>retrieve pdb-file from pdb.org</description> <macros> <token name="@EXECUTABLE@">PDBDownload</token> <import>macros.xml</import> </macros> <expand macro="stdio"/> <expand macro="requirements"/> <command>PDBDownload #if $param_id: -id "$param_id" #end if #if $param_o: -o $param_o #end if #if $param_p: -p "$param_p" #end if </command> <inputs> <param name="param_id" type="text" size="30" value="<class 'CTDopts.CTDopts._Null'>" label="PDB ID for desired structure" help="(-id) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> <param name="param_p" type="text" size="30" value="<class 'CTDopts.CTDopts._Null'>" label="proxy" help="(-p) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> </inputs> <expand macro="advanced_options"/> <outputs> <data name="param_o" format="pdb"/> </outputs> <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure. </help> </tool>