view galaxy_stubs/PDBDownload.xml @ 2:605370bc1def draft default tip

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author luis
date Tue, 12 Jul 2016 12:33:33 -0400
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<?xml version='1.0' encoding='UTF-8'?>
<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
<!--Proposed Tool Section: [Get Data]-->
<tool id="PDBDownload" name="PDBDownload" version="1.1.0">
  <description>retrieve pdb-file from pdb.org</description>
  <macros>
    <token name="@EXECUTABLE@">PDBDownload</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>PDBDownload

#if $param_id:
  -id     "$param_id"
#end if
#if $param_o:
  -o $param_o
#end if
#if $param_p:
  -p     "$param_p"
#end if
</command>
  <inputs>
    <param name="param_id" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="PDB ID for desired structure" help="(-id) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>
          <remove value="&quot;"/>
        </valid>
      </sanitizer>
    </param>
    <param name="param_p" type="text" size="30" value="&lt;class 'CTDopts.CTDopts._Null'&gt;" label="proxy" help="(-p) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>
          <remove value="&quot;"/>
        </valid>
      </sanitizer>
    </param>
  </inputs>
  <expand macro="advanced_options"/>
  <outputs>
    <data name="param_o" format="pdb"/>
  </outputs>
  <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.

</help>
</tool>