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comparison AGEseq.xml @ 6:8d5914e21ec8 draft

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author lxue
date Sat, 16 May 2015 13:38:15 -0400
parents 6f05e59194b9
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5:6f05e59194b9 6:8d5914e21ec8
6 <param format="" name="read" type="data" label="Read file (Sanger or NGS)" help="Select read file in fasta or fastq format." /> 6 <param format="" name="read" type="data" label="Read file (Sanger or NGS)" help="Select read file in fasta or fastq format." />
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9 <param name="mismatch" type="float" value="0.1" label="Mismatch Rate Cutoff" help="Mismatch rate to filter low quality alignment, default 0.1 (10 %)" /> 9 <param name="mismatch" type="float" value="0.1" label="Mismatch Rate Cutoff" help="Mismatch rate to filter low quality alignment, default 0.1 (10 %)" />
10 <param name="minAbundance" type="integer" value="0" label="Abundance Cutoff" help="Cutoff to filter reads with low abundance, default 0" /> 10 <param name="minAbundance" type="integer" value="0" label="Abundance Cutoff" help="Cutoff to filter reads with low abundance, default 0" />
11 <param name="wtNum" type="integer" value="20" label="Numbers of WT-like records to be reported" help="Report top xx WT like records, default 20" /> 11 <param name="wtNum" type="integer" value="20" label="Number of WT-like records to be reported" help="Report top xx WT like records, default 20" />
12 <param name="indelNum" type="integer" value="50" label="Numbers of records with indel to be reported" help="Report top xx records with indel, default 50" /> 12 <param name="indelNum" type="integer" value="50" label="Number of records with indel(s) to be reported" help="Report top xx records with indel(s), default 50" />
13 13
14 </inputs> 14 </inputs>
15 15
16 <outputs> 16 <outputs>
17 <data format="txt" name="output" /> 17 <data format="txt" name="output" />