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215 <li class="edge-item-fix"><a href="https://github.com/events" class="py-2 lh-condensed-ultra d-block link-gray no-underline f5" data-ga-click="(Logged out) Header, go to Events">Events</a></li>
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216 <li class="edge-item-fix"><a href="https://github.community" class="py-2 lh-condensed-ultra d-block link-gray no-underline f5" data-ga-click="(Logged out) Header, go to Community forum">Community forum</a></li>
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217 <li class="edge-item-fix"><a href="https://education.github.com" class="py-2 pb-0 lh-condensed-ultra d-block link-gray no-underline f5" data-ga-click="(Logged out) Header, go to GitHub Education">GitHub Education</a></li>
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218 </ul>
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219 </div>
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220 </details>
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221 </li>
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222
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223 <li class="border-bottom border-lg-bottom-0 mr-0 mr-lg-3">
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224 <a href="/marketplace" class="HeaderMenu-link no-underline py-3 d-block d-lg-inline-block" data-ga-click="(Logged out) Header, go to Marketplace">Marketplace</a>
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225 </li>
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226
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227 <li class="d-block d-lg-flex flex-lg-nowrap flex-lg-items-center border-bottom border-lg-bottom-0 mr-0 mr-lg-3 edge-item-fix position-relative flex-wrap flex-justify-between d-flex flex-items-center ">
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228 <details class="HeaderMenu-details details-overlay details-reset width-full">
|
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229 <summary class="HeaderMenu-summary HeaderMenu-link px-0 py-3 border-0 no-wrap d-block d-lg-inline-block">
|
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230 Pricing
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231 <svg x="0px" y="0px" viewBox="0 0 14 8" xml:space="preserve" fill="none" class="icon-chevon-down-mktg position-absolute position-lg-relative">
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232 <path d="M1,1l6.2,6L13,1"></path>
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233 </svg>
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234 </summary>
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235
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236 <div class="dropdown-menu flex-auto rounded-1 bg-white px-0 pt-2 pb-4 mt-0 p-lg-4 position-relative position-lg-absolute left-0 left-lg-n4">
|
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237 <a href="/pricing" class="pb-2 lh-condensed-ultra d-block link-gray-dark no-underline h5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Pricing">Plans <span class="Bump-link-symbol float-right text-normal text-gray-light">→</span></a>
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238
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239 <ul class="list-style-none mb-3">
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240 <li class="edge-item-fix"><a href="/pricing#feature-comparison" class="py-2 lh-condensed-ultra d-block link-gray no-underline f5" data-ga-click="(Logged out) Header, go to Compare plans">Compare plans</a></li>
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241 <li class="edge-item-fix"><a href="https://enterprise.github.com/contact" class="py-2 lh-condensed-ultra d-block link-gray no-underline f5" data-ga-click="(Logged out) Header, go to Contact Sales">Contact Sales</a></li>
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242 </ul>
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243
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244 <ul class="list-style-none mb-0 border-lg-top pt-lg-3">
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245 <li class="edge-item-fix"><a href="/nonprofit" class="py-2 lh-condensed-ultra d-block no-underline link-gray-dark no-underline h5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Nonprofits">Nonprofit <span class="Bump-link-symbol float-right text-normal text-gray-light">→</span></a></li>
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246 <li class="edge-item-fix"><a href="https://education.github.com" class="py-2 pb-0 lh-condensed-ultra d-block no-underline link-gray-dark no-underline h5 Bump-link--hover" data-ga-click="(Logged out) Header, go to Education">Education <span class="Bump-link-symbol float-right text-normal text-gray-light">→</span></a></li>
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247 </ul>
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248 </div>
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249 </details>
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250 </li>
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251 </ul>
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252 </nav>
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253
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254 <div class="d-lg-flex flex-items-center px-3 px-lg-0 text-center text-lg-left">
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255 <div class="d-lg-flex mb-3 mb-lg-0">
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256 <div class="header-search flex-self-stretch flex-lg-self-auto mr-0 mr-lg-3 mb-3 mb-lg-0 scoped-search site-scoped-search js-site-search position-relative js-jump-to"
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257 role="combobox"
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258 aria-owns="jump-to-results"
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259 aria-label="Search or jump to"
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260 aria-haspopup="listbox"
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261 aria-expanded="false"
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262 >
|
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263 <div class="position-relative">
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264 <!-- '"` --><!-- </textarea></xmp> --></option></form><form class="js-site-search-form" role="search" aria-label="Site" data-scope-type="Repository" data-scope-id="189599350" data-scoped-search-url="/huster16/fasta-tool/search" data-unscoped-search-url="/search" action="/huster16/fasta-tool/search" accept-charset="UTF-8" method="get"><input name="utf8" type="hidden" value="✓" />
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265 <label class="form-control input-sm header-search-wrapper p-0 header-search-wrapper-jump-to position-relative d-flex flex-justify-between flex-items-center js-chromeless-input-container">
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266 <input type="text"
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267 class="form-control input-sm header-search-input jump-to-field js-jump-to-field js-site-search-focus js-site-search-field is-clearable"
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268 data-hotkey="s,/"
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269 name="q"
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270 value=""
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271 placeholder="Search"
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272 data-unscoped-placeholder="Search GitHub"
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273 data-scoped-placeholder="Search"
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274 autocapitalize="off"
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275 aria-autocomplete="list"
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276 aria-controls="jump-to-results"
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277 aria-label="Search"
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278 data-jump-to-suggestions-path="/_graphql/GetSuggestedNavigationDestinations#csrf-token=qaeun0TCpku6JlDlaDfQnczgFCnlesER0i0MgCixlXTjs47a/pH0DS3VYvCduDk6AM3nIOsvExpUpd7KfaifJw=="
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279 spellcheck="false"
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280 autocomplete="off"
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281 >
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282 <input type="hidden" class="js-site-search-type-field" name="type" >
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283 <img src="https://github.githubassets.com/images/search-key-slash.svg" alt="" class="mr-2 header-search-key-slash">
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284
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285 <div class="Box position-absolute overflow-hidden d-none jump-to-suggestions js-jump-to-suggestions-container">
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286
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287 <ul class="d-none js-jump-to-suggestions-template-container">
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288
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289
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290 <li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-suggestion" role="option">
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291 <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="">
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292 <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none">
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293 <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg>
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294 <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg>
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295 <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg>
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296 </div>
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297
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298 <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28">
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299
|
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300 <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target">
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301 </div>
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302
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303 <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search">
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304 <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository">
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305 In this repository
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306 </span>
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307 <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub">
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308 All GitHub
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309 </span>
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310 <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span>
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311 </div>
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312
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313 <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump">
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314 Jump to
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315 <span class="d-inline-block ml-1 v-align-middle">↵</span>
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316 </div>
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317 </a>
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318 </li>
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319
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320 </ul>
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321
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322 <ul class="d-none js-jump-to-no-results-template-container">
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323 <li class="d-flex flex-justify-center flex-items-center f5 d-none js-jump-to-suggestion p-2">
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324 <span class="text-gray">No suggested jump to results</span>
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325 </li>
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326 </ul>
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327
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328 <ul id="jump-to-results" role="listbox" class="p-0 m-0 js-navigation-container jump-to-suggestions-results-container js-jump-to-suggestions-results-container">
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329
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330
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331 <li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-scoped-search d-none" role="option">
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332 <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="">
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333 <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none">
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334 <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg>
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335 <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg>
|
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336 <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg>
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337 </div>
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338
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339 <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28">
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340
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341 <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target">
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342 </div>
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343
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344 <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search">
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345 <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository">
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346 In this repository
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347 </span>
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348 <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub">
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349 All GitHub
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350 </span>
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351 <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span>
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352 </div>
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353
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354 <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump">
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355 Jump to
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356 <span class="d-inline-block ml-1 v-align-middle">↵</span>
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357 </div>
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358 </a>
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359 </li>
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360
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361
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362
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363 <li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-global-search d-none" role="option">
|
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364 <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="">
|
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365 <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none">
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366 <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 12 16" version="1.1" role="img"><path fill-rule="evenodd" d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"/></svg>
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367 <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 15 16" version="1.1" role="img"><path fill-rule="evenodd" d="M10 12h3V2h-3v10zm-4-2h3V2H6v8zm-4 4h3V2H2v12zm-1 1h13V1H1v14zM14 0H1a1 1 0 0 0-1 1v14a1 1 0 0 0 1 1h13a1 1 0 0 0 1-1V1a1 1 0 0 0-1-1z"/></svg>
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368 <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M15.7 13.3l-3.81-3.83A5.93 5.93 0 0 0 13 6c0-3.31-2.69-6-6-6S1 2.69 1 6s2.69 6 6 6c1.3 0 2.48-.41 3.47-1.11l3.83 3.81c.19.2.45.3.7.3.25 0 .52-.09.7-.3a.996.996 0 0 0 0-1.41v.01zM7 10.7c-2.59 0-4.7-2.11-4.7-4.7 0-2.59 2.11-4.7 4.7-4.7 2.59 0 4.7 2.11 4.7 4.7 0 2.59-2.11 4.7-4.7 4.7z"/></svg>
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369 </div>
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370
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371 <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28">
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372
|
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373 <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target">
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374 </div>
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375
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376 <div class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none js-jump-to-badge-search">
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377 <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository">
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378 In this repository
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379 </span>
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380 <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub">
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381 All GitHub
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382 </span>
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383 <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span>
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384 </div>
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385
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386 <div aria-hidden="true" class="border rounded-1 flex-shrink-0 bg-gray px-1 text-gray-light ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump">
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387 Jump to
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388 <span class="d-inline-block ml-1 v-align-middle">↵</span>
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389 </div>
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390 </a>
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391 </li>
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392
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393
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394 </ul>
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395
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396 </div>
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397 </label>
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398 </form> </div>
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399 </div>
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400
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401 </div>
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402
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403 <a class="HeaderMenu-link no-underline mr-3" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"LOG_IN","client_id":null,"originating_request_id":"8338:3535:6E3933:C6369E:5CF1EC24","originating_url":"https://github.com/huster16/fasta-tool/blob/master/fasta-tool.pl","referrer":null,"user_id":null}}" data-hydro-click-hmac="b81e5b1da80f5bf147c6fc41df2f6260716dc7bb9d4f22ed5e3c9d679abe0d30" data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in" href="/login?return_to=%2Fhuster16%2Ffasta-tool%2Fblob%2Fmaster%2Ffasta-tool.pl">
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404 Sign in
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405 </a> <a class="HeaderMenu-link d-inline-block no-underline border border-gray-dark rounded-1 px-2 py-1" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","client_id":null,"originating_request_id":"8338:3535:6E3933:C6369E:5CF1EC24","originating_url":"https://github.com/huster16/fasta-tool/blob/master/fasta-tool.pl","referrer":null,"user_id":null}}" data-hydro-click-hmac="6673527fd1af9230d9f9f2355b82d27b86564a7e6d45a356d15fda0fe7ed8418" data-ga-click="(Logged out) Header, clicked Sign up, text:sign-up" href="/join?source=header-repo">
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406 Sign up
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407 </a> </div>
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408 </div>
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409 </div>
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410 </header>
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411
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412 </div>
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413
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414 <div id="start-of-content" class="show-on-focus"></div>
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415
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416
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417 <div id="js-flash-container">
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418
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419 </div>
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420
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421
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422
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423 <div class="application-main " data-commit-hovercards-enabled>
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424 <div itemscope itemtype="http://schema.org/SoftwareSourceCode" class="">
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425 <main >
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426
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427
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428
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429
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430
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431
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432
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433
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434
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435
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436 <div class="pagehead repohead instapaper_ignore readability-menu experiment-repo-nav pt-0 pt-lg-4 ">
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437 <div class="repohead-details-container clearfix container-lg p-responsive d-none d-lg-block">
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438
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439 <ul class="pagehead-actions">
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440
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441
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442
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443
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444 <li>
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445
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685 <span><strong>1</strong> contributor</span>
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688 class="Box Box--overlay d-flex flex-column anim-fade-in fast"
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689 aria-label="Users who have contributed to this file"
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696 Users who have contributed to this file
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717 470 Bytes
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722 <div class="BtnGroup">
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723 <a id="raw-url" class="btn btn-sm BtnGroup-item" href="/huster16/fasta-tool/raw/master/fasta-tool.pl">Raw</a>
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724 <a class="btn btn-sm js-update-url-with-hash BtnGroup-item" data-hotkey="b" href="/huster16/fasta-tool/blame/master/fasta-tool.pl">Blame</a>
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725 <a rel="nofollow" class="btn btn-sm BtnGroup-item" href="/huster16/fasta-tool/commits/master/fasta-tool.pl">History</a>
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726 </div>
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727
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728
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729 <div>
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730
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731 <button type="button" class="btn-octicon disabled tooltipped tooltipped-nw"
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732 aria-label="You must be signed in to make or propose changes">
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733 <svg class="octicon octicon-pencil" viewBox="0 0 14 16" version="1.1" width="14" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M0 12v3h3l8-8-3-3-8 8zm3 2H1v-2h1v1h1v1zm10.3-9.3L12 6 9 3l1.3-1.3a.996.996 0 0 1 1.41 0l1.59 1.59c.39.39.39 1.02 0 1.41z"/></svg>
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734 </button>
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735 <button type="button" class="btn-octicon btn-octicon-danger disabled tooltipped tooltipped-nw"
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736 aria-label="You must be signed in to make or propose changes">
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737 <svg class="octicon octicon-trashcan" viewBox="0 0 12 16" version="1.1" width="12" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M11 2H9c0-.55-.45-1-1-1H5c-.55 0-1 .45-1 1H2c-.55 0-1 .45-1 1v1c0 .55.45 1 1 1v9c0 .55.45 1 1 1h7c.55 0 1-.45 1-1V5c.55 0 1-.45 1-1V3c0-.55-.45-1-1-1zm-1 12H3V5h1v8h1V5h1v8h1V5h1v8h1V5h1v9zm1-10H2V3h9v1z"/></svg>
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738 </button>
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739 </div>
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740 </div>
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741 </div>
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742
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743
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744
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745 <div itemprop="text" class="Box-body p-0 blob-wrapper data type-perl ">
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746
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747 <table class="highlight tab-size js-file-line-container" data-tab-size="8">
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748 <tr>
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749 <td id="L1" class="blob-num js-line-number" data-line-number="1"></td>
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750 <td id="LC1" class="blob-code blob-code-inner js-file-line"><span class="pl-c"><span class="pl-c">#</span>!/usr/bin/perl -w</span></td>
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751 </tr>
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752 <tr>
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753 <td id="L2" class="blob-num js-line-number" data-line-number="2"></td>
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754 <td id="LC2" class="blob-code blob-code-inner js-file-line">
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755 </td>
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756 </tr>
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757 <tr>
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758 <td id="L3" class="blob-num js-line-number" data-line-number="3"></td>
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759 <td id="LC3" class="blob-code blob-code-inner js-file-line"><span class="pl-c"><span class="pl-c">#</span> usage : perl toolExample.pl <FASTA file> <output file></span></td>
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760 </tr>
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761 <tr>
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762 <td id="L4" class="blob-num js-line-number" data-line-number="4"></td>
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763 <td id="LC4" class="blob-code blob-code-inner js-file-line">
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764 </td>
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765 </tr>
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766 <tr>
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767 <td id="L5" class="blob-num js-line-number" data-line-number="5"></td>
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768 <td id="LC5" class="blob-code blob-code-inner js-file-line"><span class="pl-c1">open</span> (IN, <span class="pl-s"><span class="pl-pds">"</span><<span class="pl-smi">$ARGV</span>[0]<span class="pl-pds">"</span></span>);</td>
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769 </tr>
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770 <tr>
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771 <td id="L6" class="blob-num js-line-number" data-line-number="6"></td>
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772 <td id="LC6" class="blob-code blob-code-inner js-file-line"><span class="pl-c1">open</span> (OUT, <span class="pl-s"><span class="pl-pds">"</span>><span class="pl-smi">$ARGV</span>[1]<span class="pl-pds">"</span></span>);</td>
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773 </tr>
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774 <tr>
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775 <td id="L7" class="blob-num js-line-number" data-line-number="7"></td>
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776 <td id="LC7" class="blob-code blob-code-inner js-file-line"><span class="pl-k">while</span> (<IN>) {</td>
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777 </tr>
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778 <tr>
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779 <td id="L8" class="blob-num js-line-number" data-line-number="8"></td>
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780 <td id="LC8" class="blob-code blob-code-inner js-file-line"> <span class="pl-c1">chop</span>;</td>
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781 </tr>
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782 <tr>
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783 <td id="L9" class="blob-num js-line-number" data-line-number="9"></td>
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784 <td id="LC9" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> (<span class="pl-sr"><span class="pl-pds"><span class="pl-c1">m</span>/</span>^><span class="pl-pds">/</span></span>) {</td>
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785 </tr>
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786 <tr>
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787 <td id="L10" class="blob-num js-line-number" data-line-number="10"></td>
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788 <td id="LC10" class="blob-code blob-code-inner js-file-line"> <span class="pl-sr"><span class="pl-pds"><span class="pl-c1">s</span>/</span>^></span><span class="pl-sr"><span class="pl-pds">//</span></span>;</td>
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789 </tr>
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790 <tr>
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791 <td id="L11" class="blob-num js-line-number" data-line-number="11"></td>
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792 <td id="LC11" class="blob-code blob-code-inner js-file-line"> <span class="pl-k">if</span> (<span class="pl-smi">$.</span> > 1) {</td>
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793 </tr>
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794 <tr>
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795 <td id="L12" class="blob-num js-line-number" data-line-number="12"></td>
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796 <td id="LC12" class="blob-code blob-code-inner js-file-line"> <span class="pl-c1">print</span> OUT <span class="pl-c1">sprintf</span>(<span class="pl-s"><span class="pl-pds">"</span>%.3f<span class="pl-pds">"</span></span>, <span class="pl-smi">$gc</span>/<span class="pl-smi">$length</span>) . <span class="pl-s"><span class="pl-pds">"</span><span class="pl-cce">\n</span><span class="pl-pds">"</span></span>;</td>
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797 </tr>
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798 <tr>
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799 <td id="L13" class="blob-num js-line-number" data-line-number="13"></td>
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800 <td id="LC13" class="blob-code blob-code-inner js-file-line"> }</td>
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801 </tr>
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802 <tr>
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803 <td id="L14" class="blob-num js-line-number" data-line-number="14"></td>
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804 <td id="LC14" class="blob-code blob-code-inner js-file-line"> <span class="pl-smi">$gc</span> = 0;</td>
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805 </tr>
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806 <tr>
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807 <td id="L15" class="blob-num js-line-number" data-line-number="15"></td>
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808 <td id="LC15" class="blob-code blob-code-inner js-file-line"> <span class="pl-smi">$length</span> = 0;</td>
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809 </tr>
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810 <tr>
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811 <td id="L16" class="blob-num js-line-number" data-line-number="16"></td>
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812 <td id="LC16" class="blob-code blob-code-inner js-file-line"> } <span class="pl-k">else</span> {</td>
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813 </tr>
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814 <tr>
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815 <td id="L17" class="blob-num js-line-number" data-line-number="17"></td>
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816 <td id="LC17" class="blob-code blob-code-inner js-file-line"> ++<span class="pl-smi">$gc</span> <span class="pl-k">while</span> <span class="pl-sr"><span class="pl-pds"><span class="pl-c1">m</span>/</span><span class="pl-c1">[gc]</span><span class="pl-pds">/</span></span><span class="pl-sr"><span class="pl-pds"><span class="pl-k">ig</span></span></span>;</td>
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817 </tr>
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818 <tr>
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819 <td id="L18" class="blob-num js-line-number" data-line-number="18"></td>
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820 <td id="LC18" class="blob-code blob-code-inner js-file-line"> <span class="pl-smi">$length</span> += <span class="pl-c1">length</span> <span class="pl-smi">$_</span>;</td>
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821 </tr>
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822 <tr>
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823 <td id="L19" class="blob-num js-line-number" data-line-number="19"></td>
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824 <td id="LC19" class="blob-code blob-code-inner js-file-line"> }</td>
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825 </tr>
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826 <tr>
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827 <td id="L20" class="blob-num js-line-number" data-line-number="20"></td>
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828 <td id="LC20" class="blob-code blob-code-inner js-file-line">}</td>
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829 </tr>
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830 <tr>
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831 <td id="L21" class="blob-num js-line-number" data-line-number="21"></td>
|
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832 <td id="LC21" class="blob-code blob-code-inner js-file-line"><span class="pl-c1">print</span> OUT <span class="pl-c1">sprintf</span>(<span class="pl-s"><span class="pl-pds">"</span>%.3f<span class="pl-pds">"</span></span>, <span class="pl-smi">$gc</span>/<span class="pl-smi">$length</span>) . <span class="pl-s"><span class="pl-pds">"</span><span class="pl-cce">\n</span><span class="pl-pds">"</span></span>;</td>
|
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833 </tr>
|
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834 <tr>
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835 <td id="L22" class="blob-num js-line-number" data-line-number="22"></td>
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836 <td id="LC22" class="blob-code blob-code-inner js-file-line"><span class="pl-c1">close</span>( IN );</td>
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837 </tr>
|
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838 <tr>
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839 <td id="L23" class="blob-num js-line-number" data-line-number="23"></td>
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840 <td id="LC23" class="blob-code blob-code-inner js-file-line"><span class="pl-c1">close</span>( OUT );</td>
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841 </tr>
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842 </table>
|
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843
|
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844 <details class="details-reset details-overlay BlobToolbar position-absolute js-file-line-actions dropdown d-none" aria-hidden="true">
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845 <summary class="btn-octicon ml-0 px-2 p-0 bg-white border border-gray-dark rounded-1" aria-label="Inline file action toolbar">
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846 <svg class="octicon octicon-kebab-horizontal" viewBox="0 0 13 16" version="1.1" width="13" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M1.5 9a1.5 1.5 0 1 0 0-3 1.5 1.5 0 0 0 0 3zm5 0a1.5 1.5 0 1 0 0-3 1.5 1.5 0 0 0 0 3zM13 7.5a1.5 1.5 0 1 1-3 0 1.5 1.5 0 0 1 3 0z"/></svg>
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847 </summary>
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848 <details-menu>
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849 <ul class="BlobToolbar-dropdown dropdown-menu dropdown-menu-se mt-2" style="width:185px">
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850 <li><clipboard-copy role="menuitem" class="dropdown-item" id="js-copy-lines" style="cursor:pointer;" data-original-text="Copy lines">Copy lines</clipboard-copy></li>
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851 <li><clipboard-copy role="menuitem" class="dropdown-item" id="js-copy-permalink" style="cursor:pointer;" data-original-text="Copy permalink">Copy permalink</clipboard-copy></li>
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852 <li><a class="dropdown-item js-update-url-with-hash" id="js-view-git-blame" role="menuitem" href="/huster16/fasta-tool/blame/7bdf0b29c9176862290c43996ac35696c746b463/fasta-tool.pl">View git blame</a></li>
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853 <li><a class="dropdown-item" id="js-new-issue" role="menuitem" href="/huster16/fasta-tool/issues/new">Reference in new issue</a></li>
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854 </ul>
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855 </details-menu>
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856 </details>
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857
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858 </div>
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859
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860 </div>
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861
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862
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863
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864 <details class="details-reset details-overlay details-overlay-dark">
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865 <summary data-hotkey="l" aria-label="Jump to line"></summary>
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866 <details-dialog class="Box Box--overlay d-flex flex-column anim-fade-in fast linejump" aria-label="Jump to line">
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867 <!-- '"` --><!-- </textarea></xmp> --></option></form><form class="js-jump-to-line-form Box-body d-flex" action="" accept-charset="UTF-8" method="get"><input name="utf8" type="hidden" value="✓" />
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868 <input class="form-control flex-auto mr-3 linejump-input js-jump-to-line-field" type="text" placeholder="Jump to line…" aria-label="Jump to line" autofocus>
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869 <button type="submit" class="btn" data-close-dialog>Go</button>
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870 </form> </details-dialog>
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871 </details>
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872
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873
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874
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875 </div>
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876 <div class="modal-backdrop js-touch-events"></div>
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877 </div>
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878
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879 </main>
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880 </div>
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884
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885
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886 <div class="footer container-lg width-full p-responsive" role="contentinfo">
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888 <ul class="list-style-none d-flex flex-wrap col-12 col-lg-5 flex-justify-center flex-lg-justify-between mb-2 mb-lg-0">
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|
|
904 <li class="mr-3 mr-lg-0"><a href="https://training.github.com" data-ga-click="Footer, go to training, text:training">Training</a></li>
|
|
905 <li class="mr-3 mr-lg-0"><a href="https://github.blog" data-ga-click="Footer, go to blog, text:blog">Blog</a></li>
|
|
906 <li><a data-ga-click="Footer, go to about, text:about" href="https://github.com/about">About</a></li>
|
|
907
|
|
908 </ul>
|
|
909 </div>
|
|
910 <div class="d-flex flex-justify-center pb-6">
|
|
911 <span class="f6 text-gray-light"></span>
|
|
912 </div>
|
|
913 </div>
|
|
914
|
|
915
|
|
916
|
|
917 <div id="ajax-error-message" class="ajax-error-message flash flash-error">
|
|
918 <svg class="octicon octicon-alert" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8.893 1.5c-.183-.31-.52-.5-.887-.5s-.703.19-.886.5L.138 13.499a.98.98 0 0 0 0 1.001c.193.31.53.501.886.501h13.964c.367 0 .704-.19.877-.5a1.03 1.03 0 0 0 .01-1.002L8.893 1.5zm.133 11.497H6.987v-2.003h2.039v2.003zm0-3.004H6.987V5.987h2.039v4.006z"/></svg>
|
|
919 <button type="button" class="flash-close js-ajax-error-dismiss" aria-label="Dismiss error">
|
|
920 <svg class="octicon octicon-x" viewBox="0 0 12 16" version="1.1" width="12" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M7.48 8l3.75 3.75-1.48 1.48L6 9.48l-3.75 3.75-1.48-1.48L4.52 8 .77 4.25l1.48-1.48L6 6.52l3.75-3.75 1.48 1.48L7.48 8z"/></svg>
|
|
921 </button>
|
|
922 You can’t perform that action at this time.
|
|
923 </div>
|
|
924
|
|
925
|
|
926 <script crossorigin="anonymous" integrity="sha512-EPrD+nddbyhpiLL8l3M8VfJpZr4J2EWQLaPXZ+6A3VDJKzS5HeZ3dkMVieHSdvIPHsMbWPyVlY42SWKoS4XTfA==" type="application/javascript" src="https://github.githubassets.com/assets/compat-bootstrap-831f12d4.js"></script>
|
|
927 <script crossorigin="anonymous" integrity="sha512-P6rRiDq0lrIYgYfVPJ4Is2goJODXsywx7ozNssJbEOAwc5cBChqaUFZ+puemlu3KAI/q5XfkOBaSNjXExBE3ag==" type="application/javascript" src="https://github.githubassets.com/assets/frameworks-15d12409.js"></script>
|
|
928
|
|
929 <script crossorigin="anonymous" async="async" integrity="sha512-sD5UHbq6I3rl+U+HEPeL+7sTZmew8P0O2uOtuHlXNJjtex4uLuwjFRTEKF/F1KbqXw52uf1B2lIwVE5ZNUqxqg==" type="application/javascript" src="https://github.githubassets.com/assets/github-bootstrap-857b0672.js"></script>
|
|
930
|
|
931
|
|
932
|
|
933 <div class="js-stale-session-flash stale-session-flash flash flash-warn flash-banner" hidden
|
|
934 >
|
|
935 <svg class="octicon octicon-alert" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M8.893 1.5c-.183-.31-.52-.5-.887-.5s-.703.19-.886.5L.138 13.499a.98.98 0 0 0 0 1.001c.193.31.53.501.886.501h13.964c.367 0 .704-.19.877-.5a1.03 1.03 0 0 0 .01-1.002L8.893 1.5zm.133 11.497H6.987v-2.003h2.039v2.003zm0-3.004H6.987V5.987h2.039v4.006z"/></svg>
|
|
936 <span class="signed-in-tab-flash">You signed in with another tab or window. <a href="">Reload</a> to refresh your session.</span>
|
|
937 <span class="signed-out-tab-flash">You signed out in another tab or window. <a href="">Reload</a> to refresh your session.</span>
|
|
938 </div>
|
|
939 <template id="site-details-dialog">
|
|
940 <details class="details-reset details-overlay details-overlay-dark lh-default text-gray-dark hx_rsm" open>
|
|
941 <summary role="button" aria-label="Close dialog"></summary>
|
|
942 <details-dialog class="Box Box--overlay d-flex flex-column anim-fade-in fast hx_rsm-dialog hx_rsm-modal">
|
|
943 <button class="Box-btn-octicon m-0 btn-octicon position-absolute right-0 top-0" type="button" aria-label="Close dialog" data-close-dialog>
|
|
944 <svg class="octicon octicon-x" viewBox="0 0 12 16" version="1.1" width="12" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M7.48 8l3.75 3.75-1.48 1.48L6 9.48l-3.75 3.75-1.48-1.48L4.52 8 .77 4.25l1.48-1.48L6 6.52l3.75-3.75 1.48 1.48L7.48 8z"/></svg>
|
|
945 </button>
|
|
946 <div class="octocat-spinner my-6 js-details-dialog-spinner"></div>
|
|
947 </details-dialog>
|
|
948 </details>
|
|
949 </template>
|
|
950
|
|
951 <div class="Popover js-hovercard-content position-absolute" style="display: none; outline: none;" tabindex="0">
|
|
952 <div class="Popover-message Popover-message--bottom-left Popover-message--large Box box-shadow-large" style="width:360px;">
|
|
953 </div>
|
|
954 </div>
|
|
955
|
|
956 <div aria-live="polite" class="js-global-screen-reader-notice sr-only"></div>
|
|
957
|
|
958 </body>
|
|
959 </html>
|
|
960
|