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comparison test-data/gatk/gatk_count_covariates/gatk_count_covariates_out_1.log.contains @ 15:01ff8dd37d4d draft default tip

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author lz_hust
date Sat, 01 Jun 2019 07:20:41 -0400
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14:68426930d59c 15:01ff8dd37d4d
1 GenomeAnalysisEngine - Strictness is SILENT
2 CountCovariatesWalker - The covariates being used here:
3 CountCovariatesWalker - ReadGroupCovariate
4 CountCovariatesWalker - QualityScoreCovariate
5 CountCovariatesWalker - CycleCovariate
6 CountCovariatesWalker - DinucCovariate
7 CountCovariatesWalker - HomopolymerCovariate
8 CountCovariatesWalker - MinimumNQSCovariate
9 CountCovariatesWalker - PositionCovariate
10 TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
11 CountCovariatesWalker - Writing raw recalibration data...
12 CountCovariatesWalker - ...done!
13 TraversalEngine - Total runtime