Mercurial > repos > lz_hust > gatktools
comparison test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains @ 15:01ff8dd37d4d draft default tip
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author | lz_hust |
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date | Sat, 01 Jun 2019 07:20:41 -0400 |
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14:68426930d59c | 15:01ff8dd37d4d |
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1 Program Args: -T UnifiedGenotyper | |
2 GenomeAnalysisEngine - Strictness is SILENT | |
3 TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING] | |
4 TraversalEngine - Location processed.sites runtime per.1M.sites completed total.runtime remaining | |
5 UnifiedGenotyper - Visited bases 5387 | |
6 UnifiedGenotyper - Callable bases 5344 | |
7 UnifiedGenotyper - Confidently called bases 5344 | |
8 UnifiedGenotyper - % callable bases of all loci 99.202 | |
9 UnifiedGenotyper - % confidently called bases of all loci 99.202 | |
10 UnifiedGenotyper - % confidently called bases of callable loci 100.000 | |
11 UnifiedGenotyper - Actual calls made 1 | |
12 TraversalEngine - Total runtime |