-
-
-
-
-
-
-
-
-
-
-
- Permalink
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Join GitHub today
-GitHub is home to over 36 million developers working together to host and review code, manage projects, and build software together.
- Sign up -
-
-
-
-
-
-
-
-
- No description, website, or topics provided.
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Fetching latest commit…
-
-
- Cannot retrieve the latest commit at this time.
-
-Type | -Name | -Latest commit message | -Commit time | -
---|---|---|---|
- | Failed to load latest commit information. | -||
- - - | -- generation - | - -- - | -|
- - - | -- tool-data - | - -- - | -|
- - - | -- .shed.yml - | - -- - | -|
- - - | -- LICENSE - | - -- - | -|
- - - | -- README - | - -- - | -|
- - - | -- analyze_covariates.xml - | - -- - | -|
- - - | -- base_recalibrator.xml - | - -- - | -|
- - - | -- combine_gvcfs.xml - | - -- - | -|
- - - | -- combine_variants.xml - | - -- - | -|
- - - | -- gatk.xml - | - -- - | -|
- - - | -- gatk_macros.xml - | - -- - | -|
- - - | -- genotype_gvcfs.xml - | - -- - | -|
- - - | -- haplotype_caller.xml - | - -- - | -|
- - - | -- indel_realigner.xml - | - -- - | -|
- - - | -- print_reads.xml - | - -- - | -|
- - - | -- realigner_target_creator.xml - | - -- - | -|
- - - | -- tool_data_table_conf.xml.sample - | - -- - | -|
- - - | -- tool_dependencies.xml - | - -- - | -
-
-
-
-
-
-
- - - README -
-
-
-
- Installation note: -A GATK license needs to be obtained separately from the Broad Institute (https://www.broadinstitute.org/gatk/) -to be able to use this tool. Once the license is obtained, the GATK Jar file must then be downloaded and moved -to /mnt/galaxy/tools/GATK/x.x-x on the server. Substitute the appropriate version number in the file path. -Be sure to download the correct version of the Jar file for the toolshed version installed. -