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comparison tool_dependencies.xml @ 7:226f241f0c92 draft

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author malbuquerque
date Tue, 20 Jan 2015 16:39:45 -0500
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6:7058d37cf97e 7:226f241f0c92
1 <?xml version="1.0"?>
2 <tool_dependency>
3
4 <package name="boost" version="1.53.0">
5 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
6 </package>
7
8 <package name="bamtools" version="2.3.0">
9 <repository changeset_revision="ad46b5210186" name="package_bamtools_2_3_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" />
10 </package>
11
12 <package name="seqtk" version="1.0.0">
13 <repository changeset_revision="35f0f4568ded" name="package_seqtk_1_0_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
15
16 <package name="delly" version="0.6.1">
17 <install version="1.0">
18 <actions>
19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action>
20 <action type="shell_command">ls $REPOSITORY_INSTALL_DIR</action>
21 <action type="move_directory_files">
22 <source_directory>$REPOSITORY_INSTALL_DIR/Makefile</source_directory>
23 <destination_directory>./Makefile</destination_directory>
24 </action>
25 <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action>
26 <action type="move_directory_files">
27 <source_directory>.</source_directory>
28 <destination_directory>$INSTALL_DIR</destination_directory>
29 </action>
30 <action type="set_environment">
31 <environment_variable action="set_to" name="DELLY_DIR">$INSTALL_DIR</environment_variable>
32 </action>
33 </actions>
34 </install>
35 </package>
36
37 </tool_dependency>