Mercurial > repos > malbuquerque > delly

comparison tool_dependencies.xml @ 17:2779d6b74419 draft

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author malbuquerque
date Tue, 20 Jan 2015 17:29:31 -0500
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16:b0c2893ac2a1 17:2779d6b74419
1 <?xml version="1.0"?>
2 <tool_dependency>
3
4 <package name="boost" version="1.53.0">
5 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
6 </package>
7
8 <package name="bamtools" version="2.3.0">
9 <repository changeset_revision="ad46b5210186" name="package_bamtools_2_3_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
10 </package>
11
12 <package name="seqtk" version="1.0.0">
13 <repository changeset_revision="35f0f4568ded" name="package_seqtk_1_0_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
15
16 <package name="delly" version="0.6.1">
17 <install version="1.0">
18 <actions>
19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action>
20 <action type="move_file">
21 <source>Makefile</source>
22 <destination>badbadbad</destination>
23 </action>
24 <action type="move_file">
25 <source>$REPOSITORY_INSTALL_DIR/Makefile</source>
26 <destination>.</destination>
27 </action>
28 <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action>
29 <action type="move_directory_files">
30 <source_directory>.</source_directory>
31 <destination_directory>$INSTALL_DIR</destination_directory>
32 </action>
33 <action type="set_environment">
34 <environment_variable action="set_to" name="DELLY_DIR">$INSTALL_DIR</environment_variable>
35 </action>
36 </actions>
37 </install>
38 </package>
39
40 </tool_dependency>