Mercurial > repos > malbuquerque > delly

comparison package/tool_dependencies.xml @ 6:7058d37cf97e draft

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author malbuquerque
date Tue, 20 Jan 2015 16:23:33 -0500
parents f7f19d0255e0
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5:f7f19d0255e0 6:7058d37cf97e
15 15
16 <package name="delly" version="0.6.1"> 16 <package name="delly" version="0.6.1">
17 <install version="1.0"> 17 <install version="1.0">
18 <actions> 18 <actions>
19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action> 19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action>
20 <action type="download_by_url">https://raw.githubusercontent.com/morinlab/galaxy_tools/master/delly/Makefile?token=AKBWDhpiQthVaz3plMQkg4ACAPGEQK1Wks5Ux-25wA%3D%3D</action> 20 <action type="shell_command">ls $REPOSITORY_INSTALL_DIR</action>
21 <action type="move_directory_files"> 21 <action type="move_directory_files">
22 <source_directory>./Makefile?token*</source_directory> 22 <source_directory>$REPOSITORY_INSTALL_DIR/Makefile</source_directory>
23 <destination_directory>./Makefile</destination_directory> 23 <destination_directory>./Makefile</destination_directory>
24 </action> 24 </action>
25 <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action> 25 <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action>
26 <action type="move_directory_files"> 26 <action type="move_directory_files">
27 <source_directory>.</source_directory> 27 <source_directory>.</source_directory>