Mercurial > repos > malbuquerque > delly
comparison package/tool_dependencies.xml @ 4:aedebcf9d2c2 draft
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author | malbuquerque |
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date | Tue, 20 Jan 2015 14:59:12 -0500 |
parents | b833f6538a4c |
children | f7f19d0255e0 |
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3:b833f6538a4c | 4:aedebcf9d2c2 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool_dependency> | 2 <tool_dependency> |
3 | 3 |
4 <package name="boost" version="1.53"> | 4 <package name="boost" version="1.53.0"> |
5 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | 5 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
6 </package> | 6 </package> |
7 | 7 |
8 <package name="bamtools" version="2.3.0"> | 8 <package name="bamtools" version="2.3.0"> |
9 <repository changeset_revision="ad46b5210186" name="package_bamtools_2_3_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" /> | 9 <repository changeset_revision="ad46b5210186" name="package_bamtools_2_3_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" /> |
15 | 15 |
16 <package name="delly" version="0.6.1"> | 16 <package name="delly" version="0.6.1"> |
17 <install version="1.0"> | 17 <install version="1.0"> |
18 <actions> | 18 <actions> |
19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action> | 19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action> |
20 <action type="shell_command">git clone https://github.com/morinlab/galaxy_tools.git</action> | 20 <action type="download_by_url">https://raw.githubusercontent.com/morinlab/galaxy_tools/master/delly/Makefile?token=AKBWDhpiQthVaz3plMQkg4ACAPGEQK1Wks5Ux-25wA%3D%3D</action> |
21 <action type="move_directory_files"> | |
22 <source_directory>./galaxy_tools/delly/Makefile</source_directory> | |
23 <destination_directory>.</destination_directory> | |
24 </action> | |
25 <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action> | 21 <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action> |
26 <action type="move_directory_files"> | 22 <action type="move_directory_files"> |
27 <source_directory>.</source_directory> | 23 <source_directory>.</source_directory> |
28 <destination_directory>$INSTALL_DIR</destination_directory> | 24 <destination_directory>$INSTALL_DIR</destination_directory> |
29 </action> | 25 </action> |