Mercurial > repos > malbuquerque > delly
comparison package/tool_dependencies.xml @ 3:b833f6538a4c draft
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author | malbuquerque |
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date | Tue, 20 Jan 2015 14:49:12 -0500 |
parents | 3bc83ccf41a4 |
children | aedebcf9d2c2 |
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2:3bc83ccf41a4 | 3:b833f6538a4c |
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15 | 15 |
16 <package name="delly" version="0.6.1"> | 16 <package name="delly" version="0.6.1"> |
17 <install version="1.0"> | 17 <install version="1.0"> |
18 <actions> | 18 <actions> |
19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action> | 19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action> |
20 <action type="download_by_url">https://github.com/morinlab/galaxy_tools.git</action> | 20 <action type="shell_command">git clone https://github.com/morinlab/galaxy_tools.git</action> |
21 <action type="move_directory_files"> | 21 <action type="move_directory_files"> |
22 <source_directory>./galaxy_tools/delly/Makefile</source_directory> | 22 <source_directory>./galaxy_tools/delly/Makefile</source_directory> |
23 <destination_directory>.</destination_directory> | 23 <destination_directory>.</destination_directory> |
24 </action> | 24 </action> |
25 <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action> | 25 <action type="shell_command">make all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action> |