Mercurial > repos > malbuquerque > delly
comparison tool_dependencies.xml @ 13:efb1f7698981 draft
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| author | malbuquerque |
|---|---|
| date | Tue, 20 Jan 2015 17:12:06 -0500 |
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| children |
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| 12:185a2045415d | 13:efb1f7698981 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 | |
| 4 <package name="boost" version="1.53.0"> | |
| 5 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 6 </package> | |
| 7 | |
| 8 <package name="bamtools" version="2.3.0"> | |
| 9 <repository changeset_revision="ad46b5210186" name="package_bamtools_2_3_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 10 </package> | |
| 11 | |
| 12 <package name="seqtk" version="1.0.0"> | |
| 13 <repository changeset_revision="35f0f4568ded" name="package_seqtk_1_0_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 14 </package> | |
| 15 | |
| 16 <package name="delly" version="0.6.1"> | |
| 17 <install version="1.0"> | |
| 18 <actions> | |
| 19 <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action> | |
| 20 <action type="shell_command">make -I $REPOSITORY_INSTALL_DIR all BOOST_ROOT=\$BOOST_ROOT BAMTOOLS_ROOT=\$BAMTOOLS_ROOT SEQTK_ROOT=\$SEQTK_ROOT</action> | |
| 21 <action type="move_directory_files"> | |
| 22 <source_directory>.</source_directory> | |
| 23 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 24 </action> | |
| 25 <action type="set_environment"> | |
| 26 <environment_variable action="set_to" name="DELLY_DIR">$INSTALL_DIR</environment_variable> | |
| 27 </action> | |
| 28 </actions> | |
| 29 </install> | |
| 30 </package> | |
| 31 | |
| 32 </tool_dependency> |