Mercurial > repos > malbuquerque > delly
view tool_dependencies.xml @ 27:5d9e545c6ffb draft
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author | malbuquerque |
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date | Tue, 20 Jan 2015 18:53:15 -0500 |
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<?xml version="1.0"?> <tool_dependency> <package name="boost" version="1.53.0"> <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="bamtools" version="2.3.0"> <repository changeset_revision="ad46b5210186" name="package_bamtools_2_3_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="seqtk" version="1.0.0"> <repository changeset_revision="35f0f4568ded" name="package_seqtk_1_0_0" owner="malbuquerque" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="delly" version="0.6.1"> <install version="1.0"> <actions> <action type="set_environment_for_install"> <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="boost" version="1.53.0" /> </repository> </action> <action type="set_environment_for_install"> <repository changeset_revision="ad46b5210186" name="package_bamtools_2_3_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="bamtools" version="2.3.0" /> </repository> </action> <action type="set_environment_for_install"> <repository changeset_revision="35f0f4568ded" name="package_seqtk_1_0_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="seqtk" version="1.0.0" /> </repository> </action> <action type="shell_command">echo $BOOST_ROOT_DIR</action> <action type="download_by_url">https://github.com/tobiasrausch/delly/archive/v0.6.1.tar.gz</action> <action type="shell_command">make -f $REPOSITORY_INSTALL_DIR/Makefile all BOOST_ROOT=$BOOST_ROOT_DIR BAMTOOLS_ROOT=$BAMTOOLS_ROOT SEQTK_ROOT=$SEQTK_ROOT</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="set_environment"> <environment_variable action="set_to" name="DELLY_DIR">$INSTALL_DIR</environment_variable> </action> </actions> </install> </package> </tool_dependency>