Mercurial > repos > malbuquerque > package_bamtools_2_3_0

comparison tool_dependencies.xml @ 11:390843b28bdd draft default tip

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author malbuquerque
date Wed, 21 Jan 2015 17:41:20 -0500
parents c0572270b095
children
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10:c0572270b095 11:390843b28bdd
10 </package> 10 </package>
11 11
12 <package name="bamtools" version="2.3.0"> 12 <package name="bamtools" version="2.3.0">
13 <install version="1.0"> 13 <install version="1.0">
14 <actions> 14 <actions>
15 15
16 <action type="shell_command">pwd &gt; ~/TEST/whereami0</action> 16 <action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action>
17 17
18 <action type="set_environment_for_install"> 18 <action type="set_environment_for_install">
19 <repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu"> 19 <repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu">
20 <package name="cmake" version="3.1.0" /> 20 <package name="cmake" version="3.1.0" />
21 </repository> 21 </repository>
22 </action> 22 </action>
23 23
24 <action type="shell_command">pwd &gt; ~/TEST/whereami1</action>
25
26 <action type="set_environment_for_install"> 24 <action type="set_environment_for_install">
27 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu"> 25 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu">
28 <package name="samtools" version="0.1.18" /> 26 <package name="samtools" version="0.1.18" />
29 </repository> 27 </repository>
30 </action> 28 </action>
31 29
32 <action type="shell_command">pwd &gt; ~/TEST/whereami2</action>
33 <action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action>
34 <action type="shell_command">pwd &gt; ~/TEST/whereami3</action>
35 <action type="shell_command">mkdir build</action> 30 <action type="shell_command">mkdir build</action>
36 <action type="shell_command">pwd &gt; ~/TEST/whereami4</action>
37 <action type="change_directory">build</action> 31 <action type="change_directory">build</action>
38 <action type="shell_command">pwd &gt; ~/TEST/whereami5</action>
39 <action type="shell_command">cmake ..</action> 32 <action type="shell_command">cmake ..</action>
40 <action type="shell_command">pwd &gt; ~/TEST/whereami6</action>
41 <action type="shell_command">make</action> 33 <action type="shell_command">make</action>
42 <action type="shell_command">pwd &gt; ~/TEST/whereami7</action>
43 <action type="change_directory">..</action> 34 <action type="change_directory">..</action>
44 <action type="shell_command">pwd &gt; ~/TEST/whereami8</action>
45 35
46 <action type="move_directory_files"> 36 <action type="move_directory_files">
47 <source_directory>./</source_directory> 37 <source_directory>./</source_directory>
48 <destination_directory>$INSTALL_DIR</destination_directory> 38 <destination_directory>$INSTALL_DIR</destination_directory>
49 </action> 39 </action>