Mercurial > repos > malbuquerque > package_bamtools_2_3_0

diff tool_dependencies.xml @ 9:031f77d360ea draft

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Uploaded
author malbuquerque
date Wed, 21 Jan 2015 17:29:11 -0500
parents e6fbfcc95901
children c0572270b095
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jan 21 17:25:59 2015 -0500
+++ b/tool_dependencies.xml	Wed Jan 21 17:29:11 2015 -0500
@@ -12,19 +12,24 @@
 		<package name="bamtools" version="2.3.0">
 			<install version="1.0">
 				<actions>
-
+		
+					<action type="shell_command">pwd &gt; ~/whereami-2</action>
+		
 					<action type="set_environment_for_install">
 						<repository changeset_revision="782e014e71f9" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu">
 							<package name="cmake" version="3.1.0" />
 						</repository>
 					</action>
 
+					<action type="shell_command">pwd &gt; ~/whereami-1</action>
+
 					<action type="set_environment_for_install">
 						<repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu">
 							<package name="samtools" version="0.1.18" />
 						</repository>
 					</action>
-	
+					
+					<action type="shell_command">pwd &gt; ~/whereami0</action>	
 					<action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action>
 					<action type="shell_command">pwd &gt; ~/whereami</action>
 					<action type="shell_command">mkdir build</action>