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"planemo upload for repository https://github.com/secimTools/SECIMTools/tree/main/galaxy commit 498abad641099412df56f04ff6e144e4193bbc34-dirty"
author malex
date Thu, 10 Jun 2021 15:41:17 +0000
parents 2e7d47c0b027
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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1 <?xml version="1.0" ?>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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2 <macros>
2
caba07f41453 "planemo upload for repository https://github.com/secimTools/SECIMTools/tree/main/galaxy commit 498abad641099412df56f04ff6e144e4193bbc34-dirty"
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3 <token name="@WRAPPER_VERSION@">21.6.3</token>
1
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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4 <xml name="requirements">
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5 <requirements>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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6 <requirement type="package" version="@WRAPPER_VERSION@">secimtools</requirement>
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7 <yield/>
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8 </requirements>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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9 </xml> <xml name="citations">
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10 <citations>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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11 <citation type="bibtex">@ARTICLE{Kirpich17secimtools,
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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12 author = {Alexander S. Kirpich, Miguel Ibarra, Oleksandr Moskalenko, Justin M. Fear, Joseph Gerken, Xinlei Mi, Ali Ashrafi, Alison M. Morse, Lauren M. McIntyre},
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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13 title = {SECIMTools: A suite of Metabolomics Data Analysis Tools},
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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14 journal = {BMC Bioinformatics},
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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15 year = {in press}
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16 }</citation>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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17 </citations>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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18 </xml>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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19
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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20 <token name="@TIP_AND_WARNING@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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21 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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22
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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23 **WARNINGS:**
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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24
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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25 (1) SampleIDs in the wide data that have no matching name in the design file, as well as sampleIDs in the design file that have no matching name in the data, will be excluded from the analysis.
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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26 (2) This script automatically removes spaces and special characters from strings.
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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27 (3) If a compound/feature name starts with a number it will prepend an '_'.
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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28 (4) Input names are case sensitive and must match exactly (e.g use 'Feature' not 'feature').
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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29 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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30 <token name="@WIDE@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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31 **Wide Formatted Dataset**
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32
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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33 A wide formatted dataset that contains measurements for each sample:
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34
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35 +---------+---------+---------+---------+-----+
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36 | Feature | sample1 | sample2 | sample3 | ... |
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37 +=========+=========+=========+=========+=====+
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38 | one | 10 | 20 | 10 | ... |
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39 +---------+---------+---------+---------+-----+
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40 | two | 5 | 22 | 30 | ... |
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41 +---------+---------+---------+---------+-----+
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42 | three | 30 | 27 | 2 | ... |
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43 +---------+---------+---------+---------+-----+
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44 | four | 32 | 17 | 8 | ... |
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45 +---------+---------+---------+---------+-----+
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46 | ... | ... | ... | ... | ... |
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47 +---------+---------+---------+---------+-----+
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48
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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49 **NOTE:** The 'Feature' column defines the rows within a wide formatted dataset.
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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50 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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51 <token name="@METADATA@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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52 **Design File**
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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53
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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54 A Design file relating samples to various groups/treatment:
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55
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56 +----------+--------+
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57 | sampleID | group |
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58 +==========+========+
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59 | sample1 | g1 |
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60 +----------+--------+
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61 | sample2 | g1 |
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62 +----------+--------+
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63 | sample3 | g1 |
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64 +----------+--------+
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65 | sample4 | g2 |
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66 +----------+--------+
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67 | sample5 | g2 |
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68 +----------+--------+
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69 | sample6 | g2 |
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70 +----------+--------+
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71 | ... | ... |
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72 +----------+--------+
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73
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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74 **NOTE:** You must have a column named **sampleID** and the values in this column must match the column names in the wide dataset.
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75 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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76 <token name="@DF@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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77 **Design File**
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78
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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79 A Design file relating samples to various groups/treatment:
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80
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81 +----------+--------+
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82 | sampleID | group |
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83 +==========+========+
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84 | sample1 | g1 |
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85 +----------+--------+
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86 | sample2 | g1 |
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87 +----------+--------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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88 | sample3 | g1 |
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89 +----------+--------+
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90 | sample4 | g2 |
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91 +----------+--------+
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92 | sample5 | g2 |
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93 +----------+--------+
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94 | sample6 | g2 |
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95 +----------+--------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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96 | ... | ... |
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97 +----------+--------+
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98
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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99 **NOTE:** You must have a column named **sampleID** and the values in this column must match
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100 the column names in the long dataset.
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101 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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102 <token name="@LONG@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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103 **Long Dataset:**
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104
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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105 A dataset in long/stacked format that contains measurements for each sample:
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106
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
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107 +----------+----------+------------+
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108 | Feature | sampleID | Peak Height|
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109 +==========+==========+============+
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110 | One | 1 | 10 |
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111 +----------+----------+------------+
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112 | One | 2 | 5 |
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113 +----------+----------+------------+
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114 | One | 3 | 30 |
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116 | Two | 1 | 20 |
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117 +----------+----------+------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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118 | Two | 2 | 22 |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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119 +----------+----------+------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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120 | Two | 3 | 27 |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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121 +----------+----------+------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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122 | ... | ... | ... |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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123 +----------+----------+------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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124
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
125 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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126 <token name="@FLAGS@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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127 **Flag File:**
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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128
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
129 A wide formated dataset that contains flags for each sample or feature:
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
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130
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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131 +----------+---------+---------+---------+-----+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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132 | Feature | flag_A | flag_B | flag_C | ... |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
133 +==========+=========+=========+=========+=====+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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134 | one | 0 | 0 | 0 | ... |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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135 +----------+---------+---------+---------+-----+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
136 | two | 0 | 1 | 1 | ... |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
137 +----------+---------+---------+---------+-----+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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138 | three | 0 | 1 | 0 | ... |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
139 +----------+---------+---------+---------+-----+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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140 | four | 1 | 0 | 0 | ... |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
141 +----------+---------+---------+---------+-----+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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142 | ... | ... | ... | ... | ... |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
143 +----------+---------+---------+---------+-----+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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144
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
145 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
146 <token name="@MZRTFILE@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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147 **M/Z RT File:**
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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148
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
149 A wide formated dataset that contains M/Z and RT measurements for each sample:
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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150
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
151 +----------+--------+----------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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152 | sampleID | M/Z | Retention Time |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
153 +==========+========+================+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
154 | sample1 | 0.1556 | 0.253618769 |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
155 +----------+--------+----------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
156 | sample2 | 0.1675 | 0.327658519 |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
157 +----------+--------+----------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
158 | sample3 | 0.1341 | 0.156587769 |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
159 +----------+--------+----------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
160 | sample4 | 0.2341 | 0.153658165 |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
161 +----------+--------+----------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
162 | sample5 | 0.4557 | 0.315765787 |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
163 +----------+--------+----------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
164 | sample6 | 0.1879 | 0.253655765 |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
165 +----------+--------+----------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
166 | ... | ... | ... |
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
167 +----------+--------+----------------+
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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168
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
169 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
170 <token name="@GROUP_OPTIONAL@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
171 **Group/Treatment [Optional]**
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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172
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
173 - Name of the column in your Design File that contains group classifications.
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
174 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
175 <token name="@GROUP@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
176 **Group/Treatment**
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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177
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
178 - Name of the column in your Design File that contains group classifications.
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
179 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
180 <token name="@UNIQID@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
181 **Unique Feature ID**
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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182
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
183 - Name of the column in your Wide Dataset that has unique Feature IDs.
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
184 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
185 <token name="@RUNORDER@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
186 **Run Order ID**
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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187
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
188 - The column name in your Design file that contains the order samples were run.
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
189 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
190 <token name="@RUNORDER_OPTIONAL@">
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
191 **Run Order ID [Optional]**
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
192
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
diff changeset
193 - The column name in your Design file that contains the order samples were run.
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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194 </token>
2e7d47c0b027 "planemo upload for repository https://malex@toolshed.g2.bx.psu.edu/repos/malex/secimtools"
malex
parents:
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195 </macros>