Mercurial > repos > mandorodriguez > fastqdump_paired
comparison fastq_dump_paired.xml @ 1:3c39bed00a4c draft
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author | mandorodriguez |
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date | Tue, 06 Oct 2015 14:33:40 -0400 |
parents | 4a455773d235 |
children | 2ff0cde149b1 |
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0:4a455773d235 | 1:3c39bed00a4c |
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1 <tool id="fastq_dump_paired" name="FASTQ Dump paired downloader" version="1.0"> | 1 <tool id="fastq_dump_paired" name="FASTQ Dump paired downloader" version="1.1"> |
2 <description>Downloads a set of paired reads by their accession number using fastq-dump tool from sra-toolkit.</description> | 2 <description>Downloads a set of paired reads by their accession number using fastq-dump tool from sra-toolkit.</description> |
3 <requirements> | 3 <requirements> |
4 <!-- Should just use the samtools that's installed in the path --> | 4 <!-- Should just use the samtools that's installed in the path --> |
5 <requirement type="binary">fastq-dump</requirement> | 5 <requirement type="binary">fastq-dump</requirement> |
6 </requirements> | 6 </requirements> |
15 </command> | 15 </command> |
16 <inputs> | 16 <inputs> |
17 <param name="accession_number" size="10" type="text" value="" label="Accession Number"/> | 17 <param name="accession_number" size="10" type="text" value="" label="Accession Number"/> |
18 </inputs> | 18 </inputs> |
19 <outputs> | 19 <outputs> |
20 <data format="fastq" label="${tool.name} on ${on_string}: Forward Reads" name="forward_reads" from_work_dir="R1.fastq" > | 20 <data format="fastqsanger" label="${tool.name} on ${on_string}: Forward Reads" name="forward_reads" from_work_dir="R1.fastq" > |
21 </data> | 21 </data> |
22 <data format="fastq" label="${tool.name} on ${on_string}: Reverse Reads" name="reverse_reads" from_work_dir="R2.fastq" > | 22 <data format="fastqsanger" label="${tool.name} on ${on_string}: Reverse Reads" name="reverse_reads" from_work_dir="R2.fastq" > |
23 </data> | 23 </data> |
24 </outputs> | 24 </outputs> |
25 | 25 |
26 <tests> | 26 <tests> |
27 <!-- Empty --> | 27 <!-- Empty --> |