Mercurial > repos > mandorodriguez > fastqdump_paired

comparison fastq_dump_paired.xml @ 1:3c39bed00a4c draft

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author mandorodriguez
date Tue, 06 Oct 2015 14:33:40 -0400
parents 4a455773d235
children 2ff0cde149b1
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0:4a455773d235 1:3c39bed00a4c
1 <tool id="fastq_dump_paired" name="FASTQ Dump paired downloader" version="1.0"> 1 <tool id="fastq_dump_paired" name="FASTQ Dump paired downloader" version="1.1">
2 <description>Downloads a set of paired reads by their accession number using fastq-dump tool from sra-toolkit.</description> 2 <description>Downloads a set of paired reads by their accession number using fastq-dump tool from sra-toolkit.</description>
3 <requirements> 3 <requirements>
4 <!-- Should just use the samtools that's installed in the path --> 4 <!-- Should just use the samtools that's installed in the path -->
5 <requirement type="binary">fastq-dump</requirement> 5 <requirement type="binary">fastq-dump</requirement>
6 </requirements> 6 </requirements>
15 </command> 15 </command>
16 <inputs> 16 <inputs>
17 <param name="accession_number" size="10" type="text" value="" label="Accession Number"/> 17 <param name="accession_number" size="10" type="text" value="" label="Accession Number"/>
18 </inputs> 18 </inputs>
19 <outputs> 19 <outputs>
20 <data format="fastq" label="${tool.name} on ${on_string}: Forward Reads" name="forward_reads" from_work_dir="R1.fastq" > 20 <data format="fastqsanger" label="${tool.name} on ${on_string}: Forward Reads" name="forward_reads" from_work_dir="R1.fastq" >
21 </data> 21 </data>
22 <data format="fastq" label="${tool.name} on ${on_string}: Reverse Reads" name="reverse_reads" from_work_dir="R2.fastq" > 22 <data format="fastqsanger" label="${tool.name} on ${on_string}: Reverse Reads" name="reverse_reads" from_work_dir="R2.fastq" >
23 </data> 23 </data>
24 </outputs> 24 </outputs>
25 25
26 <tests> 26 <tests>
27 <!-- Empty --> 27 <!-- Empty -->