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comparison fastq_dump_paired.xml @ 7:dbee556cf940 draft

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author mandorodriguez
date Thu, 21 Jan 2016 12:56:46 -0500
parents aadca684d7c5
children daebdda744fc
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6:aadca684d7c5 7:dbee556cf940
1 <tool id="fastq_dump_paired" name="FASTQ Dump paired downloader" version="1.1.2"> 1 <tool id="fastq_dump_paired" name="FASTQ Dump paired downloader" version="1.1.3">
2 <description>Downloads a set of paired reads by their accession number using fastq-dump tool from sra-toolkit.</description> 2 <description>Downloads a set of paired reads by their accession number using fastq-dump tool from sra-toolkit.</description>
3 <requirements> 3 <requirements>
4 <!-- Should just use the samtools that's installed in the path --> 4 <!-- Should just use the samtools that's installed in the path -->
5 <requirement type="binary">fastq-dump</requirement> 5 <requirement type="binary">fastq-dump</requirement>
6 </requirements> 6 </requirements>
35 35
36 Performs a fastq-dump with the split-3 option. 36 Performs a fastq-dump with the split-3 option.
37 37
38 :: 38 ::
39 39
40 fastq-dump --log-level fatal --split-3 --accession accession_number 40 fastq-dump --log-level fatal --split-3 --accession accession_number --ncbi_error_report never
41 41
42 42
43 Data is stored in fastqsanger format. 43 Data is stored in fastqsanger format.
44 44
45 The metadata is now named to make it easier for collection lists to 45 The metadata is now named to make it easier for collection lists to