Mercurial > repos > mandorodriguez > fastqdump_paired
diff fastq_dump_paired.xml @ 4:6c9eb322892d draft
Uploaded
author | mandorodriguez |
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date | Wed, 28 Oct 2015 17:43:11 -0400 |
parents | b3e5722aa5e7 |
children | 86e30bb1e54e |
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--- a/fastq_dump_paired.xml Tue Oct 13 16:36:24 2015 -0400 +++ b/fastq_dump_paired.xml Wed Oct 28 17:43:11 2015 -0400 @@ -1,4 +1,4 @@ -<tool id="fastq_dump_paired" name="FASTQ Dump paired downloader" version="1.1"> +<tool id="fastq_dump_paired" name="FASTQ Dump paired downloader" version="1.1.1"> <description>Downloads a set of paired reads by their accession number using fastq-dump tool from sra-toolkit.</description> <requirements> <!-- Should just use the samtools that's installed in the path --> @@ -17,9 +17,9 @@ <param name="accession_number" size="10" type="text" value="" label="Accession Number"/> </inputs> <outputs> - <data format="fastqsanger" label="${tool.name} on ${on_string}: ${accession_number} Forward Reads" name="forward_reads" from_work_dir="R1.fastq" > + <data format="fastqsanger" label="${accession_number}_1" name="forward_reads" from_work_dir="R1.fastq" > </data> - <data format="fastqsanger" label="${tool.name} on ${on_string}: ${accession_number} Reverse Reads" name="reverse_reads" from_work_dir="R2.fastq" > + <data format="fastqsanger" label="${accession_number}_2" name="reverse_reads" from_work_dir="R2.fastq" > </data> </outputs> @@ -40,7 +40,10 @@ fastq-dump --log-level fatal --split-3 --accession accession_number -Data is stored in fastqsanger format. +Data is stored in fastqsanger format. + +The metadata is now named to make it easier for collection lists to +fetch when you search for reads in your history. ------