# HG changeset patch # User mandorodriguez # Date 1453396824 18000 # Node ID 86e30bb1e54e6e8714e97025dce994a71ac7b43c # Parent 6c9eb322892d35c6761e679692d9af308a9fda0c Uploaded diff -r 6c9eb322892d -r 86e30bb1e54e fastq_dump_paired.xml --- a/fastq_dump_paired.xml Wed Oct 28 17:43:11 2015 -0400 +++ b/fastq_dump_paired.xml Thu Jan 21 12:20:24 2016 -0500 @@ -8,7 +8,7 @@ ## The command is a Cheetah template which allows some Python based syntax. ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces ## ! We only have a simple single command here. -fastq-dump --log-level fatal --split-3 --accession ${accession_number}; +fastq-dump --log-level fatal --split-3 --accession ${accession_number} --ncbi_error_report never; ls -lh | grep ${accession_number}; mv -v ${accession_number}_1.fastq R1.fastq; mv -v ${accession_number}_2.fastq R2.fastq;