Mercurial > repos > mandorodriguez > fastqdump_paired

changeset 4:6c9eb322892d draft

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Uploaded
author mandorodriguez
date Wed, 28 Oct 2015 17:43:11 -0400
parents b3e5722aa5e7
children 86e30bb1e54e
files fastq_dump_paired.xml
diffstat 1 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/fastq_dump_paired.xml	Tue Oct 13 16:36:24 2015 -0400
+++ b/fastq_dump_paired.xml	Wed Oct 28 17:43:11 2015 -0400
@@ -1,4 +1,4 @@
-<tool id="fastq_dump_paired" name="FASTQ Dump paired downloader" version="1.1">
+<tool id="fastq_dump_paired" name="FASTQ Dump paired downloader" version="1.1.1">
     <description>Downloads a set of paired reads by their accession number using fastq-dump tool from sra-toolkit.</description>
     <requirements>
        <!-- Should just use the samtools that's installed in the path -->
@@ -17,9 +17,9 @@
         <param name="accession_number" size="10" type="text" value="" label="Accession Number"/>
     </inputs>
     <outputs>
-       <data format="fastqsanger" label="${tool.name} on ${on_string}: ${accession_number} Forward Reads" name="forward_reads" from_work_dir="R1.fastq" >
+       <data format="fastqsanger" label="${accession_number}_1" name="forward_reads" from_work_dir="R1.fastq" >
        </data>
-       <data format="fastqsanger" label="${tool.name} on ${on_string}: ${accession_number} Reverse Reads" name="reverse_reads" from_work_dir="R2.fastq" >
+       <data format="fastqsanger" label="${accession_number}_2" name="reverse_reads" from_work_dir="R2.fastq" >
        </data>
     </outputs>
     
@@ -40,7 +40,10 @@
   fastq-dump --log-level fatal --split-3 --accession accession_number
 
 
-Data is stored in fastqsanger format.
+Data is stored in fastqsanger format. 
+
+The metadata is now named to make it easier for collection lists to
+fetch when you search for reads in your history. 
 
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