annotate samifier/protein_generator.sh @ 2:66ad014e6975 draft default tip

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author marc-wilkins
date Tue, 06 Aug 2013 20:43:24 -0400
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1 #!/bin/bash
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2
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3 if (type -p java >> /dev/null); then
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4 _java=java
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5 elif [[ -n "$JAVA_HOME" ]] && [[ -x "$JAVA_HOME/bin/java" ]]; then
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6 _java="$JAVA_HOME/bin/java"
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7 else
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8 echo "You must install java before runing this tool" >&2
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9 exit 1
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10 fi
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11
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12 if [[ "$_java" ]]; then
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13 version=$("$_java" -version 2>&1 | awk -F '"' '/version/ {print $2}')
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14 if ! [[ "$version" > "1.6" ]]; then
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15 echo "Java version should be > 1.6" >&2
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16 exit 1
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17 fi
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18 fi
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19
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20 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
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21
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22 jar_path="${DIR}/${1}"
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23 shift
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24
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25 java -Xmx3072M -jar $jar_path $@