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annotate CADDSuite-1.5/galaxyconfigs/confFiles.py @ 15:ac342506cd4e draft

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CADDSuite version 1.5
author Marcel Schumann <schumann.marcel@gmail.com>
date Tue, 24 Jul 2012 11:08:49 -0400
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1 # -*- coding: utf-8 -*-
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2 """
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3 XML format classes
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4 """
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5 import data
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6 import logging
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7 from galaxy.datatypes.sniff import *
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8 import commands
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10 log = logging.getLogger(__name__)
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13 class ini( data.Text ):
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14 file_ext = "ini"
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15 def sniff( self, filename ):
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16 self.no_sections = commands.getstatusoutput("grep -c \"\[Docking-Settings\]\" "+filename)
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17 if (self.no_sections[0] == 0) & (self.no_sections[1] > 0):
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18 return True
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19 else:
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20 self.no_sections = commands.getstatusoutput("grep -c \"\[ReferenceArea\" "+filename)
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21 if (self.no_sections[0] == 0) & (self.no_sections[1] > 0):
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22 return True
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23 else:
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24 self.no_sections = commands.getstatusoutput("grep -c \"\[PharmacophoreConstraint\" "+filename)
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25 if (self.no_sections[0] == 0) & (self.no_sections[1] > 0):
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26 return True
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27 else:
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28 return False
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