Mercurial > repos > marcel > caddsuite_linux_x86_64
comparison CADDSuite-1.5/galaxyconfigs/tools/GalaxyConfigGenerator.xml @ 15:ac342506cd4e draft
CADDSuite version 1.5
| author | Marcel Schumann <schumann.marcel@gmail.com> |
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| date | Tue, 24 Jul 2012 11:08:49 -0400 |
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| 14:55c32b55c2c2 | 15:ac342506cd4e |
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| 1 | |
| 2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> | |
| 3 <tool id="galaxyconfiggenerator" name="GalaxyConfigGenerator" version="1.5"> | |
| 4 <description>generate galaxy tool-config files</description> | |
| 5 <command interpreter="bash"><![CDATA[../../GalaxyConfigGenerator | |
| 6 #if str( $i ) != '' and str( $i ) != 'None' : | |
| 7 -i "$i" | |
| 8 #end if | |
| 9 #if str( $o ) != '' and str( $o ) != 'None' : | |
| 10 -o "$o" | |
| 11 #end if | |
| 12 #if str( $ignore ) != '' and str( $ignore ) != 'None' : | |
| 13 -ignore "$ignore" | |
| 14 #end if | |
| 15 #if str( $s ) != '' and str( $s ) != 'None' : | |
| 16 -s "$s" | |
| 17 #end if | |
| 18 | tail -n 5 | |
| 19 ]]></command> | |
| 20 <inputs> | |
| 21 <param name="i" optional="false" label="input par-file" type="data" format="data"/> | |
| 22 <param name="ignore" optional="true" label="Optional: tool-parameter to be ignored, i.e. those for which no galaxy config entry should be created" area="true" type="text" size="1x15"/> | |
| 23 </inputs> | |
| 24 <outputs> | |
| 25 <data name="o" format="xml"/> | |
| 26 <data name="s" format="data"/> | |
| 27 </outputs> | |
| 28 <help>This tool can be used to create galaxy tool-configuration files. | |
| 29 As input, please supply a parameter-file as written by '-write_par' by all of our tools.</help> | |
| 30 </tool> |