Mercurial > repos > marcel > caddsuite_linux_x86_64

comparison CADDSuite/galaxyconfigs/tools/BindingDBCleaner.xml @ 5:b7a89b15646f

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author marcel
date Tue, 12 Jul 2011 10:23:33 -0400
parents ff6df146c0d5
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4:02c8570cde57 5:b7a89b15646f
1 1
2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> 2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
3 <tool id="bindingdbcleaner" name="BindingDBCleaner" version="0.94"> 3 <tool id="bindingdbcleaner" name="BindingDBCleaner" version="0.95">
4 <description>fix bindingdb.org downloads</description> 4 <description>fix bindingdb.org downloads</description>
5 <command interpreter="bash"><![CDATA[../../BindingDBCleaner 5 <command interpreter="bash"><![CDATA[../../BindingDBCleaner
6 #if str( $i ) != '' and str( $i ) != 'None' : 6 #if str( $i ) != '' and str( $i ) != 'None' :
7 -i "$i" 7 -i "$i"
8 #end if 8 #end if
16 -target "$target" 16 -target "$target"
17 #end if 17 #end if
18 | tail -n 5 18 | tail -n 5
19 ]]></command> 19 ]]></command>
20 <inputs> 20 <inputs>
21 <param name="i" label="input file" optional="false" type="data" format="mol2/sdf/drf"/> 21 <param name="i" optional="false" label="input file" type="data" format="mol2/sdf/drf"/>
22 <param name="type" label="type of contained activity values: 'Ki' or 'IC50'" optional="false" type="select"> 22 <param name="type" optional="false" label="type of contained activity values: 'Ki' or 'IC50'" type="select">
23 <option value="IC50">IC50</option> 23 <option value="IC50">IC50</option>
24 <option value="Ki">Ki</option> 24 <option value="Ki">Ki</option>
25 </param> 25 </param>
26 <param name="target" label="binding-DB target name" optional="false" area="true" type="text" size="1x15"/> 26 <param name="target" optional="false" label="binding-DB target name" area="true" type="text" size="1x15"/>
27 </inputs> 27 </inputs>
28 <outputs> 28 <outputs>
29 <data name="o" format="mol2/sdf/drf" format_source="i"/> 29 <data name="o" format="mol2/sdf/drf" format_source="i"/>
30 </outputs> 30 </outputs>
31 <help>This tool cleans up the sd-properties contained in sd-files downloaded from bindingdb.org. 31 <help>This tool cleans up the sd-properties contained in sd-files downloaded from bindingdb.org.