Mercurial > repos > marcel > caddsuite_linux_x86_64

comparison CADDSuite/galaxyconfigs/tools/DBImporter.xml @ 5:b7a89b15646f

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author marcel
date Tue, 12 Jul 2011 10:23:33 -0400
parents ff6df146c0d5
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4:02c8570cde57 5:b7a89b15646f
1 1
2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> 2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
3 <tool id="dbimporter" name="DBImporter" version="0.94 (ob)"> 3 <tool id="dbimporter" name="DBImporter" version="0.95 (ob)">
4 <description>import molecules into data base</description> 4 <description>import molecules into data base</description>
5 <command interpreter="bash"><![CDATA[../../DBImporter 5 <command interpreter="bash"><![CDATA[../../DBImporter
6 #if str( $i ) != '' and str( $i ) != 'None' : 6 #if str( $i ) != '' and str( $i ) != 'None' :
7 -i "$i" 7 -i "$i"
8 #end if 8 #end if
37 -vu "$vu" 37 -vu "$vu"
38 #end if 38 #end if
39 | tail -n 5 39 | tail -n 5
40 ]]></command> 40 ]]></command>
41 <inputs> 41 <inputs>
42 <param name="i" label="input file" optional="false" type="data" format="mol2/sdf/drf"/> 42 <param name="i" optional="false" label="input file" type="data" format="mol2/sdf/drf"/>
43 <param name="target" label="target/dataset name whose molecules should be exported" optional="true" area="true" type="text" size="1x15"/> 43 <param name="target" optional="true" label="Optional: target/dataset name whose molecules should be exported" area="true" type="text" size="1x15"/>
44 <param name="d" label="database name" optional="false" area="true" type="text" size="1x15"/> 44 <param name="d" optional="false" label="database name" area="true" type="text" size="1x15"/>
45 <param name="u" label="database username" optional="false" area="true" type="text" size="1x15"/> 45 <param name="u" optional="false" label="database username" area="true" type="text" size="1x15"/>
46 <param name="h" label="database host" optional="false" area="true" type="text" size="1x15"/> 46 <param name="h" optional="false" label="database host" area="true" type="text" size="1x15"/>
47 <param name="port" label="database port" optional="true" type="text" area="true" size="1x5" value="3306"/> 47 <param name="port" optional="true" label="Optional: database port" type="text" area="true" size="1x5" value="3306"/>
48 <param name="p" label="database password" optional="false" area="true" type="text" size="1x15"/> 48 <param name="p" optional="false" label="database password" area="true" type="text" size="1x15"/>
49 <param name="vn" label="name of compound vendor" optional="true" area="true" type="text" size="1x15"/> 49 <param name="vn" optional="true" label="Optional: name of compound vendor" area="true" type="text" size="1x15"/>
50 <param name="vid" label="name of vendor's compound-ID tag in sd-file" optional="true" area="true" type="text" size="1x15"/> 50 <param name="vid" optional="true" label="Optional: name of vendor's compound-ID tag in sd-file" area="true" type="text" size="1x15"/>
51 <param name="vd" label="vendor library date or version" optional="true" area="true" type="text" size="1x15"/> 51 <param name="vd" optional="true" label="Optional: vendor library date or version" area="true" type="text" size="1x15"/>
52 <param name="vu" label="url from wich vendor library was obtained" optional="true" area="true" type="text" size="1x15"/> 52 <param name="vu" optional="true" label="Optional: url from wich vendor library was obtained" area="true" type="text" size="1x15"/>
53 </inputs> 53 </inputs>
54 <outputs/> 54 <outputs/>
55 <help>This tool imports molecules into a database. 55 <help>This tool imports molecules into a database.
56 As input we need the file containing the molecules to be imported in sd-, mol2- or drf-format.</help> 56 As input we need the file containing the molecules to be imported in sd-, mol2- or drf-format.</help>
57 </tool> 57 </tool>