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comparison CADDSuite/galaxyconfigs/tools/ProteinCheck.xml @ 5:b7a89b15646f

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author marcel
date Tue, 12 Jul 2011 10:23:33 -0400
parents ff6df146c0d5
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4:02c8570cde57 5:b7a89b15646f
1 1
2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> 2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
3 <tool id="proteincheck" name="ProteinCheck" version="0.94"> 3 <tool id="proteincheck" name="ProteinCheck" version="0.95">
4 <description>quality check for proteins structures</description> 4 <description>quality check for proteins structures</description>
5 <command interpreter="bash"><![CDATA[../../ProteinCheck 5 <command interpreter="bash"><![CDATA[../../ProteinCheck
6 #if str( $i ) != '' and str( $i ) != 'None' : 6 #if str( $i ) != '' and str( $i ) != 'None' :
7 -i "$i" 7 -i "$i"
8 #end if 8 #end if
13 -bc 13 -bc
14 #end if 14 #end if
15 | tail -n 5 15 | tail -n 5
16 ]]></command> 16 ]]></command>
17 <inputs> 17 <inputs>
18 <param name="i" label="input pdb-file" optional="false" type="data" format="pdb"/> 18 <param name="i" optional="false" label="input pdb-file" type="data" format="pdb"/>
19 <param name="bc" label="ignore broken chains" optional="true" type="boolean" truevalue="true" falsevalue=""/> 19 <param name="bc" optional="true" label="ignore broken chains" type="boolean" truevalue="true" falsevalue=""/>
20 </inputs> 20 </inputs>
21 <outputs> 21 <outputs>
22 <data name="o" format="pdf"/> 22 <data name="o" format="pdf"/>
23 </outputs> 23 </outputs>
24 <help>Check a given protein structure for the following errors: 24 <help>Check a given protein structure for the following errors: