Mercurial > repos > marcel > caddsuite_linux_x86_64

comparison CADDSuite/galaxyconfigs/tools/VendorFinder.xml @ 5:b7a89b15646f

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author marcel
date Tue, 12 Jul 2011 10:23:33 -0400
parents ff6df146c0d5
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4:02c8570cde57 5:b7a89b15646f
1 1
2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> 2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
3 <tool id="vendorfinder" name="VendorFinder" version="0.94"> 3 <tool id="vendorfinder" name="VendorFinder" version="0.95">
4 <description>search vendors for compounds</description> 4 <description>search vendors for compounds</description>
5 <command interpreter="bash"><![CDATA[../../VendorFinder 5 <command interpreter="bash"><![CDATA[../../VendorFinder
6 #if str( $i ) != '' and str( $i ) != 'None' : 6 #if str( $i ) != '' and str( $i ) != 'None' :
7 -i "$i" 7 -i "$i"
8 #end if 8 #end if
28 -opt 28 -opt
29 #end if 29 #end if
30 | tail -n 5 30 | tail -n 5
31 ]]></command> 31 ]]></command>
32 <inputs> 32 <inputs>
33 <param name="i" label="input file containing compounds" optional="false" type="data" format="mol2/sdf/drf"/> 33 <param name="i" optional="false" label="input file containing compounds" type="data" format="mol2/sdf/drf"/>
34 <param name="d" label="database name" optional="false" area="true" type="text" size="1x15"/> 34 <param name="d" optional="false" label="database name" area="true" type="text" size="1x15"/>
35 <param name="u" label="database username" optional="false" area="true" type="text" size="1x15"/> 35 <param name="u" optional="false" label="database username" area="true" type="text" size="1x15"/>
36 <param name="h" label="database host" optional="false" area="true" type="text" size="1x15"/> 36 <param name="h" optional="false" label="database host" area="true" type="text" size="1x15"/>
37 <param name="port" label="database port" optional="true" type="text" area="true" size="1x5" value="3306"/> 37 <param name="port" optional="true" label="Optional: database port" type="text" area="true" size="1x5" value="3306"/>
38 <param name="p" label="database password" optional="false" area="true" type="text" size="1x15"/> 38 <param name="p" optional="false" label="database password" area="true" type="text" size="1x15"/>
39 <param name="opt" label="optimize purchase, i.e. select cheapest sources and sort by vendor" optional="true" type="boolean" truevalue="true" falsevalue=""/> 39 <param name="opt" optional="true" label="optimize purchase, i.e. select cheapest sources and sort by vendor" type="boolean" truevalue="true" falsevalue=""/>
40 </inputs> 40 </inputs>
41 <outputs> 41 <outputs>
42 <data name="o" format="txt"/> 42 <data name="o" format="txt"/>
43 </outputs> 43 </outputs>
44 <help>This tool can be used to fetch information about vendors for each compound in the given input file from a data base. 44 <help>This tool can be used to fetch information about vendors for each compound in the given input file from a data base.