Mercurial > repos > marcel > caddsuite_linux_x86_64
diff CADDSuite-1.0.1/data/OpenBabel/mr.txt @ 9:2cff9609f2c7
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author | marcel |
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date | Tue, 15 Nov 2011 10:40:26 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CADDSuite-1.0.1/data/OpenBabel/mr.txt Tue Nov 15 10:40:26 2011 -0500 @@ -0,0 +1,168 @@ +###################################################################### +# Copyright OELIB: OpenEye Scientific Software, Santa Fe, +# U.S.A., 1999,2000,2001 +# Copyright JOELIB/JOELib2: Dept. Computer Architecture, University of +# Tuebingen, Germany, 2001,2002,2003,2004,2005 +# Copyright JOELIB/JOELib2: ALTANA PHARMA AG, Konstanz, Germany, +# 2003,2004,2005 +# +# Authors: Stephen Jelfs +# Joerg Kurt Wegner, me@cheminformatics.eu +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation version 2 of the License. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +###################################################################### +# MR Atomic Contributions +# ref. Wildman, S.A. and Crippen, G.M., J. Chem. Inf. Comput. +# Sci., 1999, 39, 868-873. +# Table below is adapted from above ref. +###################################################################### +;hydrogen +[*] 1.112 +[#6] 1.057 +[#1] 1.057 +[O][CX4] 1.395 +[O]c 1.395 +[O][#5] 1.395 +[O][#14] 1.395 +[O][#15] 1.395 +[O][#33] 1.395 +[O][#50] 1.395 +[#5] 1.395 +[#14] 1.395 +[#15] 1.395 +[#16] 1.395 +[#50] 1.395 +[#7] 0.9627 +[O][#7] 0.9627 +[O]C=[#6] 1.805 +[O]C=[#7] 1.805 +[O]C=O 1.805 +[O]C=S 1.805 +[O]O 1.805 +[O]S 1.805 +;heavy +[*] 0 +[#6] 3.243 +[CH4] 2.503 +[CH3]C 2.503 +[CH2](C)C 2.503 +[CH](C)(C)C 2.433 +[C](C)(C)(C)C 2.433 +[CH3][O,N,F,Cl,Br,#15,#16,#53;!a] 2.753 +[CH2X4][O,N,F,Cl,Br,#15,#16,#53;!a] 2.753 +[CHX4][O,N,F,Cl,Br,#15,#16,#53;!a] 2.731 +[CH0X4][O,N,F,Cl,Br,#15,#16,#53;!a] 2.731 +[C]=[A!#6] 5.007 +[CH2]=C 3.513 +[CH1](=C)A 3.513 +[CH0](=C)(A)A 3.513 +[C](=C)=C 3.513 +[CX2]#A 3.888 +[CH3]c 2.464 +[CH3][a!#6] 2.412 +[CH2X4]a 2.488 +[CHX4]a 2.582 +[CH0X4]a 2.576 +[c][#5,#14,#15,#33,#34,#50,#80] 4.041 +[c][#9] 3.257 +[c][#17] 3.564 +[c][#35] 3.18 +[c][#53] 3.104 +[cH] 3.35 +[c](:a)(:a):a 4.346 +[c](:a)(:a)-a 3.904 +[c](:a)(:a)-C 3.509 +[c](:a)(:a)-N 4.067 +[c](:a)(:a)-O 3.853 +[c](:a)(:a)-S 2.673 +[c](:a)(:a)=C 3.135 +[c](:a)(:a)=N 3.135 +[c](:a)(:a)=O 3.135 +[C](=C)(a)A 4.305 +[C](=C)(c)a 4.305 +[CH](=C)a 4.305 +[C]=c 4.305 +[CX4][!#6;!#7;!#8;!#9;!#15;!#16;!#17;!#35;!#53] 2.693 +[#7] 2.134 +[NH2+0]A 2.262 +[NH+0](A)A 2.173 +[NH2+0]a 2.827 +[NH+0](A)a 3 +[NH+0](a)a 3 +[NH+0]=A 1.757 +[NH+0]=a 1.757 +[N+0](=A)A 2.428 +[N+0](=A)a 2.428 +[N+0](=a)A 2.428 +[N+0](=a)a 2.428 +[N+0](A)(A)A 1.839 +[N+0](a)(A)A 2.819 +[N+0](a)(a)A 2.819 +[N+0](a)(a)a 2.819 +[N+0]#A 1.725 +[NH3+*] 2.134 +[NH2+*] 2.134 +[NH+*] 2.134 +[n+0] 2.202 +[n+*] 2.134 +[NH0+*](A)(A)(A)A 0.2604 +[NH0+*](=A)(A)A 0.2604 +[NH0+*](=A)(A)a 0.2604 +[NH0+*](=[#6])=[#7] 0.2604 +[N+*]#A 3.359 +[N-*] 3.359 +[N+*](=[N-*])=N 3.359 +[#8] 0.6865 +[o] 1.08 +[OH] 0.8238 +[OH2] 0.8238 +[O](C)C 1.085 +[OH0](C)[A!#6] 1.085 +[OH0]([A!#6])[A!#6] 1.085 +[O](A)a 1.182 +[O](a)a 1.182 +[O]=[#8] 3.367 +[O]=[#7] 3.367 +[OX1-*][#7] 3.367 +[OX1-*][#16] 0.7774 +[OX1-*][#15;#33;#43;#53] 0 +[O]=c 3.135 +[O]=[CH]C 0 +[O]=C(C)C 0 +[O]=[CH0](C)[A;!6] 0 +[O]=[CH]N 0 +[O]=[CH]O 0 +[O]=[CH2] 0 +[O]=[CX2]=O 0 +[O]=[CH]c 0.2215 +[O]=C(C)c 0.2215 +[O]=C(c)c 0.2215 +[O]=[CH0](c)[a!#6] 0.2215 +[O]=[CH0](c)[A!#6] 0.2215 +[O]=[CH0](C)[a!#6] 0.2215 +[O]=C([A!#6])[A!#6] 0.389 +[O]=C([A!#6])[a!#6] 0.389 +[O]=C([a!#6])[a!#6] 0.389 +[O-1]C(=O) 0.6865 +[#9-0] 1.108 +[#17-0] 5.853 +[#35-0] 8.927 +[#53-0] 14.02 +[#9-*] 1.108 +[#17-*] 5.853 +[#35-*] 8.927 +[#53-*] 14.02 +[#53+*] 14.02 +[#15] 6.920 +[S-0] 7.591 +[S-*] 7.365 +[S+*] 7.365 +[s] 6.691 +[B,Si,Ga,Ge,As,Se,Sn,Te,Pb,Nc,Nr,Kr,Xe,Rn] 5.754