--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CADDSuite-1.0.1/data/fragments/Names.CHARMM.db	Tue Nov 15 10:40:26 2011 -0500
@@ -0,0 +1,279 @@
+<node>CHARMM<value>PDB</value>
+ <node>*:H1<value>*:1H</value></node>
+ <node>*:H2<value>*:2H</value></node>
+ <node>*:H3<value>*:3H</value></node>
+ <node>*:N<value>*:N</value></node>
+ <node>*:C<value>*:C</value></node>
+ <node>*:CA<value>*:CA</value></node>
+ <node>*:O<value>*:O</value></node>
+ <node>*:H<value>*:H</value></node>
+ <node>*:OT1<value>*:O</value></node>
+ <node>*:OT2<value>*:OXT</value></node>
+ <node>*:OCT1<value>*:O</value></node>
+ <node>*:OCT2<value>*:OXT</value></node>
+ <node>*:HT1<value>*:1H</value></node>
+ <node>*:HT2<value>*:2H</value></node>
+ <node>*:HT3<value>*:3H</value></node>
+ <node>ALA:HB1<value>ALA:1HB</value></node>
+ <node>ALA:HB2<value>ALA:2HB</value></node>
+ <node>ALA:HB3<value>ALA:3HB</value></node>
+ <node>ARG:HB2<value>ARG:1HB</value></node>
+ <node>ARG:HB3<value>ARG:2HB</value></node>
+ <node>ARG:HG2<value>ARG:1HG</value></node>
+ <node>ARG:HG3<value>ARG:2HG</value></node>
+ <node>ARG:HD2<value>ARG:1HD</value></node>
+ <node>ARG:HD3<value>ARG:2HD</value></node>
+ <node>ARG:HH1<value>ARG:1HH1</value></node>
+ <node>ARG:HH2<value>ARG:1HH2</value></node>
+ <node>ARG:HH11<value>ARG:1HH1</value></node>
+ <node>ARG:HH12<value>ARG:2HH1</value></node>
+ <node>ARG:HH21<value>ARG:1HH2</value></node>
+ <node>ARG:HH22<value>ARG:2HH2</value></node>
+ <node>ASN:HB2<value>ASN:1HB</value></node>
+ <node>ASN:HB3<value>ASN:2HB</value></node>
+ <node>ASN:HD1<value>ASN:1HD1</value></node>
+ <node>ASN:HD2<value>ASN:1HD2</value></node>
+ <node>ASN:HD21<value>ASN:1HD2</value></node>
+ <node>ASN:HD22<value>ASN:2HD2</value></node>
+ <node>ASP:HB2<value>ASP:1HB</value></node>
+ <node>ASP:HB3<value>ASP:2HB</value></node>
+ <node>CYS:HB2<value>CYS:1HB</value></node>
+ <node>CYS:HB3<value>CYS:2HB</value></node>
+ <node>GLU:HB2<value>GLU:1HB</value></node>
+ <node>GLU:HB3<value>GLU:2HB</value></node>
+ <node>GLU:HG2<value>GLU:1HG</value></node>
+ <node>GLU:HG3<value>GLU:2HG</value></node>
+ <node>GLN:HB2<value>GLN:1HB</value></node>
+ <node>GLN:HB3<value>GLN:2HB</value></node>
+ <node>GLN:HG2<value>GLN:1HG</value></node>
+ <node>GLN:HG3<value>GLN:2HG</value></node>
+ <node>GLN:HE21<value>GLN:1HE2</value></node>
+ <node>GLN:HE22<value>GLN:2HE2</value></node>
+ <node>GLN:HE1<value>GLN:1HE1</value></node>
+ <node>GLN:HE2<value>GLN:1HE2</value></node>
+ <node>GLY:HA2<value>GLY:1HA</value></node>
+ <node>GLY:HA3<value>GLY:2HA</value></node>
+ <node>HIS:HB2<value>HIS:1HB</value></node>
+ <node>HIS:HB3<value>HIS:2HB</value></node>
+ <node>HIE:*<value>HIS:*</value></node>
+ <node>HID:*<value>HIS:*</value></node>
+ <node>HIP:*<value>HIS:*</value></node>
+ <node>ILE:HG21<value>ILE:1HG2</value></node>
+ <node>ILE:HG22<value>ILE:2HG2</value></node>
+ <node>ILE:HG23<value>ILE:3HG2</value></node>
+ <node>ILE:HG12<value>ILE:1HG1</value></node>
+ <node>ILE:HG13<value>ILE:2HG1</value></node>
+ <node>ILE:HD11<value>ILE:1HD1</value></node>
+ <node>ILE:HD12<value>ILE:2HD1</value></node>
+ <node>ILE:HD13<value>ILE:3HD1</value></node>
+ <node>ILE:CD<value>ILE:CD1</value></node>
+ <node>LEU:HB2<value>LEU:1HB</value></node>
+ <node>LEU:HB3<value>LEU:2HB</value></node>
+ <node>LEU:HD11<value>LEU:1HD1</value></node>
+ <node>LEU:HD12<value>LEU:2HD1</value></node>
+ <node>LEU:HD13<value>LEU:3HD1</value></node>
+ <node>LEU:HD21<value>LEU:1HD2</value></node>
+ <node>LEU:HD22<value>LEU:2HD2</value></node>
+ <node>LEU:HD23<value>LEU:3HD2</value></node>
+ <node>LYS:HB2<value>LYS:1HB</value></node>
+ <node>LYS:HB3<value>LYS:2HB</value></node>
+ <node>LYS:HG2<value>LYS:1HG</value></node>
+ <node>LYS:HG3<value>LYS:2HG</value></node>
+ <node>LYS:HD2<value>LYS:1HD</value></node>
+ <node>LYS:HD3<value>LYS:2HD</value></node>
+ <node>LYS:HE2<value>LYS:1HE</value></node>
+ <node>LYS:HE3<value>LYS:2HE</value></node>
+ <node>LYS:HZ1<value>LYS:1HZ</value></node>
+ <node>LYS:HZ2<value>LYS:2HZ</value></node>
+ <node>LYS:HZ3<value>LYS:3HZ</value></node>
+ <node>MET:HB2<value>MET:1HB</value></node>
+ <node>MET:HB3<value>MET:2HB</value></node>
+ <node>MET:HG2<value>MET:1HG</value></node>
+ <node>MET:HG3<value>MET:2HG</value></node>
+ <node>MET:HE1<value>MET:1HE</value></node>
+ <node>MET:HE2<value>MET:2HE</value></node>
+ <node>MET:HE3<value>MET:3HE</value></node>
+ <node>PHE:HB2<value>PHE:1HB</value></node>
+ <node>PHE:HB3<value>PHE:2HB</value></node>
+ <node>PRO:HD2<value>PRO:1HD</value></node>
+ <node>PRO:HD3<value>PRO:2HD</value></node>
+ <node>PRO:HG2<value>PRO:1HG</value></node>
+ <node>PRO:HG3<value>PRO:2HG</value></node>
+ <node>PRO:HB2<value>PRO:1HB</value></node>
+ <node>PRO:HB3<value>PRO:2HB</value></node>
+ <node>SER:HB2<value>SER:1HB</value></node>
+ <node>SER:HB3<value>SER:2HB</value></node>
+ <node>THR:HG21<value>THR:1HG2</value></node>
+ <node>THR:HG22<value>THR:2HG2</value></node>
+ <node>THR:HG23<value>THR:3HG2</value></node>
+ <node>TRP:HB2<value>TRP:1HB</value></node>
+ <node>TRP:HB3<value>TRP:2HB</value></node>
+ <node>TYR:HB2<value>TYR:1HB</value></node>
+ <node>TYR:HB3<value>TYR:2HB</value></node>
+ <node>VAL:HG11<value>VAL:1HG1</value></node>
+ <node>VAL:HG12<value>VAL:2HG1</value></node>
+ <node>VAL:HG13<value>VAL:3HG1</value></node>
+ <node>VAL:HG21<value>VAL:1HG2</value></node>
+ <node>VAL:HG22<value>VAL:2HG2</value></node>
+ <node>VAL:HG23<value>VAL:3HG2</value></node>
+ <node>ACE:HH31<value>ACE:1HH3</value></node>
+ <node>ACE:HH32<value>ACE:2HH3</value></node>
+ <node>ACE:HH33<value>ACE:3HH3</value></node>
+ <node>NME:HH31<value>NME:1HH3</value></node>
+ <node>NME:HH32<value>NME:2HH3</value></node>
+ <node>NME:HH33<value>NME:3HH3</value></node>
+ <node>ALA:CA<value>ALA:CA</value></node>
+ <node>ALA:HA<value>ALA:HA</value></node>
+ <node>ALA:CB<value>ALA:CB</value></node>
+ <node>ARG:CA<value>ARG:CA</value></node>
+ <node>ARG:HA<value>ARG:HA</value></node>
+ <node>ARG:CB<value>ARG:CB</value></node>
+ <node>ARG:CG<value>ARG:CG</value></node>
+ <node>ARG:CD<value>ARG:CD</value></node>
+ <node>ARG:NE<value>ARG:NE</value></node>
+ <node>ARG:HE<value>ARG:HE</value></node>
+ <node>ARG:CZ<value>ARG:CZ</value></node>
+ <node>ARG:NH1<value>ARG:NH1</value></node>
+ <node>ARG:NH2<value>ARG:NH2</value></node>
+ <node>ASN:CA<value>ASN:CA</value></node>
+ <node>ASN:HA<value>ASN:HA</value></node>
+ <node>ASN:CB<value>ASN:CB</value></node>
+ <node>ASN:CG<value>ASN:CG</value></node>
+ <node>ASN:OD1<value>ASN:OD1</value></node>
+ <node>ASN:ND2<value>ASN:ND2</value></node>
+ <node>ASP:CA<value>ASP:CA</value></node>
+ <node>ASP:HA<value>ASP:HA</value></node>
+ <node>ASP:CB<value>ASP:CB</value></node>
+ <node>ASP:CG<value>ASP:CG</value></node>
+ <node>ASP:OD1<value>ASP:OD1</value></node>
+ <node>ASP:OD2<value>ASP:OD2</value></node>
+ <node>CYS:CA<value>CYS:CA</value></node>
+ <node>CYS:HA<value>CYS:HA</value></node>
+ <node>CYS:CB<value>CYS:CB</value></node>
+ <node>CYS:SG<value>CYS:SG</value></node>
+ <node>CYS:HG<value>CYS:HG</value></node>
+ <node>GLU:CA<value>GLU:CA</value></node>
+ <node>GLU:HA<value>GLU:HA</value></node>
+ <node>GLU:CB<value>GLU:CB</value></node>
+ <node>GLU:CG<value>GLU:CG</value></node>
+ <node>GLU:CD<value>GLU:CD</value></node>
+ <node>GLU:OE1<value>GLU:OE1</value></node>
+ <node>GLU:OE2<value>GLU:OE2</value></node>
+ <node>GLN:CA<value>GLN:CA</value></node>
+ <node>GLN:HA<value>GLN:HA</value></node>
+ <node>GLN:CB<value>GLN:CB</value></node>
+ <node>GLN:CG<value>GLN:CG</value></node>
+ <node>GLN:CD<value>GLN:CD</value></node>
+ <node>GLN:OE1<value>GLN:OE1</value></node>
+ <node>GLN:NE2<value>GLN:NE2</value></node>
+ <node>GLY:CA<value>GLY:CA</value></node>
+ <node>HIS:CA<value>HIS:CA</value></node>
+ <node>HIS:HA<value>HIS:HA</value></node>
+ <node>HIS:CB<value>HIS:CB</value></node>
+ <node>HIS:CG<value>HIS:CG</value></node>
+ <node>HIS:ND1<value>HIS:ND1</value></node>
+ <node>HIS:HD1<value>HIS:HD1</value></node>
+ <node>HIS:CE1<value>HIS:CE1</value></node>
+ <node>HIS:HE1<value>HIS:HE1</value></node>
+ <node>HIS:NE2<value>HIS:NE2</value></node>
+ <node>HIS:HE2<value>HIS:HE2</value></node>
+ <node>HIS:CD2<value>HIS:CD2</value></node>
+ <node>HIS:HD2<value>HIS:HD2</value></node>
+ <node>ILE:CA<value>ILE:CA</value></node>
+ <node>ILE:HA<value>ILE:HA</value></node>
+ <node>ILE:CB<value>ILE:CB</value></node>
+ <node>ILE:HB<value>ILE:HB</value></node>
+ <node>ILE:CG2<value>ILE:CG2</value></node>
+ <node>ILE:CG1<value>ILE:CG1</value></node>
+ <node>ILE:CD1<value>ILE:CD1</value></node>
+ <node>LEU:CA<value>LEU:CA</value></node>
+ <node>LEU:HA<value>LEU:HA</value></node>
+ <node>LEU:CB<value>LEU:CB</value></node>
+ <node>LEU:CG<value>LEU:CG</value></node>
+ <node>LEU:HG<value>LEU:HG</value></node>
+ <node>LEU:CD1<value>LEU:CD1</value></node>
+ <node>LEU:CD2<value>LEU:CD2</value></node>
+ <node>LYS:CA<value>LYS:CA</value></node>
+ <node>LYS:HA<value>LYS:HA</value></node>
+ <node>LYS:CB<value>LYS:CB</value></node>
+ <node>LYS:CG<value>LYS:CG</value></node>
+ <node>LYS:CD<value>LYS:CD</value></node>
+ <node>LYS:CE<value>LYS:CE</value></node>
+ <node>LYS:NZ<value>LYS:NZ</value></node>
+ <node>MET:CA<value>MET:CA</value></node>
+ <node>MET:HA<value>MET:HA</value></node>
+ <node>MET:CB<value>MET:CB</value></node>
+ <node>MET:CG<value>MET:CG</value></node>
+ <node>MET:SD<value>MET:SD</value></node>
+ <node>MET:CE<value>MET:CE</value></node>
+ <node>PHE:CA<value>PHE:CA</value></node>
+ <node>PHE:HA<value>PHE:HA</value></node>
+ <node>PHE:CB<value>PHE:CB</value></node>
+ <node>PHE:CG<value>PHE:CG</value></node>
+ <node>PHE:CD1<value>PHE:CD1</value></node>
+ <node>PHE:HD1<value>PHE:HD1</value></node>
+ <node>PHE:CE1<value>PHE:CE1</value></node>
+ <node>PHE:HE1<value>PHE:HE1</value></node>
+ <node>PHE:CZ<value>PHE:CZ</value></node>
+ <node>PHE:HZ<value>PHE:HZ</value></node>
+ <node>PHE:CE2<value>PHE:CE2</value></node>
+ <node>PHE:HE2<value>PHE:HE2</value></node>
+ <node>PHE:CD2<value>PHE:CD2</value></node>
+ <node>PHE:HD2<value>PHE:HD2</value></node>
+ <node>PRO:CA<value>PRO:CA</value></node>
+ <node>PRO:HA<value>PRO:HA</value></node>
+ <node>PRO:CD<value>PRO:CD</value></node>
+ <node>PRO:CG<value>PRO:CG</value></node>
+ <node>PRO:CB<value>PRO:CB</value></node>
+ <node>SER:CA<value>SER:CA</value></node>
+ <node>SER:HA<value>SER:HA</value></node>
+ <node>SER:CB<value>SER:CB</value></node>
+ <node>SER:OG<value>SER:OG</value></node>
+ <node>SER:HG<value>SER:HG</value></node>
+ <node>THR:CA<value>THR:CA</value></node>
+ <node>THR:HA<value>THR:HA</value></node>
+ <node>THR:CB<value>THR:CB</value></node>
+ <node>THR:HB<value>THR:HB</value></node>
+ <node>THR:CG2<value>THR:CG2</value></node>
+ <node>THR:OG1<value>THR:OG1</value></node>
+ <node>THR:HG1<value>THR:HG1</value></node>
+ <node>TRP:CA<value>TRP:CA</value></node>
+ <node>TRP:HA<value>TRP:HA</value></node>
+ <node>TRP:CB<value>TRP:CB</value></node>
+ <node>TRP:CG<value>TRP:CG</value></node>
+ <node>TRP:CD1<value>TRP:CD1</value></node>
+ <node>TRP:HD1<value>TRP:HD1</value></node>
+ <node>TRP:NE1<value>TRP:NE1</value></node>
+ <node>TRP:HE1<value>TRP:HE1</value></node>
+ <node>TRP:CE2<value>TRP:CE2</value></node>
+ <node>TRP:CZ2<value>TRP:CZ2</value></node>
+ <node>TRP:HZ2<value>TRP:HZ2</value></node>
+ <node>TRP:CH2<value>TRP:CH2</value></node>
+ <node>TRP:HH2<value>TRP:HH2</value></node>
+ <node>TRP:CZ3<value>TRP:CZ3</value></node>
+ <node>TRP:HZ3<value>TRP:HZ3</value></node>
+ <node>TRP:CE3<value>TRP:CE3</value></node>
+ <node>TRP:HE3<value>TRP:HE3</value></node>
+ <node>TRP:CD2<value>TRP:CD2</value></node>
+ <node>TYR:CA<value>TYR:CA</value></node>
+ <node>TYR:HA<value>TYR:HA</value></node>
+ <node>TYR:CB<value>TYR:CB</value></node>
+ <node>TYR:CG<value>TYR:CG</value></node>
+ <node>TYR:CD1<value>TYR:CD1</value></node>
+ <node>TYR:HD1<value>TYR:HD1</value></node>
+ <node>TYR:CE1<value>TYR:CE1</value></node>
+ <node>TYR:HE1<value>TYR:HE1</value></node>
+ <node>TYR:CZ<value>TYR:CZ</value></node>
+ <node>TYR:OH<value>TYR:OH</value></node>
+ <node>TYR:HH<value>TYR:HH</value></node>
+ <node>TYR:CE2<value>TYR:CE2</value></node>
+ <node>TYR:HE2<value>TYR:HE2</value></node>
+ <node>TYR:CD2<value>TYR:CD2</value></node>
+ <node>TYR:HD2<value>TYR:HD2</value></node>
+ <node>VAL:CA<value>VAL:CA</value></node>
+ <node>VAL:HA<value>VAL:HA</value></node>
+ <node>VAL:CB<value>VAL:CB</value></node>
+ <node>VAL:HB<value>VAL:HB</value></node>
+ <node>VAL:CG1<value>VAL:CG1</value></node>
+ <node>VAL:CG2<value>VAL:CG2</value></node>
+</node>