Mercurial > repos > marcel > caddsuite_linux_x86_64
diff CADDSuite-1.0.1/galaxyconfigs/tools/InputPartitioner.xml @ 9:2cff9609f2c7
Uploaded
author | marcel |
---|---|
date | Tue, 15 Nov 2011 10:40:26 -0500 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CADDSuite-1.0.1/galaxyconfigs/tools/InputPartitioner.xml Tue Nov 15 10:40:26 2011 -0500 @@ -0,0 +1,28 @@ + +<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> +<tool id="inputpartitioner" name="InputPartitioner" version="1.0.1"> + <description>split QSAR data set</description> + <command interpreter="bash"><![CDATA[../../InputPartitioner +#if str( $i ) != '' and str( $i ) != 'None' : + -i "$i" +#end if +#if str( $o ) != '' and str( $o ) != 'None' : + -o "$o" +#end if +#if str( $n ) != '' and str( $n ) != 'None' : + -n "$n" +#end if + | tail -n 5 +]]></command> + <inputs> + <param name="i" optional="false" label="input data-file" type="data" format="dat"/> + <param name="n" optional="false" label="number of partitions" type="text" area="true" size="1x5" value=""/> + </inputs> + <outputs> + <data name="o" format="dat"/> + </outputs> + <help>InputPartitioner partitions a given QSAR data set into n partitions with evenly distributed response values. +Thus, this tool can be useful as part of a nested validation pipeline. +Input is a data file as generated by InputReader. +Output will be written to n files postfixed '_TRAIN<i>.dat' and '_TEST<i>.dat', where <i> is the ID of the resp. partition. For each of these partitions, the training set contains only those compounds that were not selected for the resp. test set.</help> +</tool> \ No newline at end of file