Mercurial > repos > marcel > caddsuite_linux_x86_64
diff CADDSuite/suite_config.xml @ 5:b7a89b15646f
Uploaded
author | marcel |
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date | Tue, 12 Jul 2011 10:23:33 -0400 |
parents | ff6df146c0d5 |
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--- a/CADDSuite/suite_config.xml Tue Jun 28 10:37:20 2011 -0400 +++ b/CADDSuite/suite_config.xml Tue Jul 12 10:23:33 2011 -0400 @@ -1,4 +1,4 @@ -<suite id="CADDSuite_toolsuite" name="CADDSuite" version="0.94"> +<suite id="CADDSuite_toolsuite" name="CADDSuite" version="0.95"> <description> CADDSuite: A flexible and open framework for Computer-Aided Drug Design @@ -6,135 +6,135 @@ <tool id="cadds_upload" name="Upload File" version="1.1.2"> <description>from your computer</description> </tool> -<tool id="antitargetrescorer" name="AntitargetRescorer" version="0.94"> +<tool id="antitargetrescorer" name="AntitargetRescorer" version="0.95"> <description>rescore w/ anti-target dock-results</description> </tool> -<tool id="bindingdbcleaner" name="BindingDBCleaner" version="0.94"> +<tool id="automodel" name="AutoModel" version="0.95"> + <description>automatically find best QSAR model</description> +</tool> +<tool id="bindingdbcleaner" name="BindingDBCleaner" version="0.95"> <description>fix bindingdb.org downloads</description> </tool> -<tool id="combilibgenerator" name="CombiLibGenerator" version="0.94"> +<tool id="combilibgenerator" name="CombiLibGenerator" version="0.95"> <description>generate combinatorial lib</description> </tool> -<tool id="constraintsfinder" name="ConstraintsFinder" version="0.94"> +<tool id="constraintsfinder" name="ConstraintsFinder" version="0.95"> <description>find strongly interacting residues</description> </tool> -<tool id="converter" name="Converter" version="0.94"> +<tool id="converter" name="Converter" version="0.95"> <description>interconvert molecular file-formats</description> </tool> -<tool id="dbexporter" name="DBExporter" version="0.94 (ob)"> +<tool id="dbexporter" name="DBExporter" version="0.95 (ob)"> <description>export molecules from data base</description> </tool> -<tool id="dbimporter" name="DBImporter" version="0.94 (ob)"> +<tool id="dbimporter" name="DBImporter" version="0.95 (ob)"> <description>import molecules into data base</description> </tool> -<tool id="dockresultmerger" name="DockResultMerger" version="0.94"> +<tool id="dockresultmerger" name="DockResultMerger" version="0.95"> <description>merge docking output files</description> </tool> -<tool id="evensplit" name="EvenSplit" version="0.94"> +<tool id="evensplit" name="EvenSplit" version="0.95"> <description>generate splits w/ equal property range</description> </tool> -<tool id="galaxyconfiggenerator" name="GalaxyConfigGenerator" version="0.94"> +<tool id="featureselector" name="FeatureSelector" version="0.95"> + <description>run feature-selection on a QSAR model</description> +</tool> +<tool id="galaxyconfiggenerator" name="GalaxyConfigGenerator" version="0.95"> <description>generate galaxy tool-config files</description> </tool> -<tool id="gridbuilder" name="GridBuilder" version="0.94"> +<tool id="gridbuilder" name="GridBuilder" version="0.95"> <description>create score-grids for docking</description> </tool> -<tool id="imeedydock" name="IMGDock" version="0.94"> +<tool id="imeedydock" name="IMGDock" version="0.95"> <description>Iterative Multi-Greedy Docking</description> </tool> -<tool id="interactionconstraintdefiner" name="InteractionConstraintDefiner" version="0.94"> +<tool id="inputpartitioner" name="InputPartitioner" version="0.95"> + <description>split QSAR data set</description> +</tool> +<tool id="inputreader" name="InputReader" version="0.95"> + <description>generate QSAR data set</description> +</tool> +<tool id="interactionconstraintdefiner" name="InteractionConstraintDefiner" version="0.95"> <description>define interaction constraint</description> </tool> -<tool id="ligcheck" name="LigCheck" version="0.94"> +<tool id="ligcheck" name="LigCheck" version="0.95"> <description>check molecules for errors</description> </tool> -<tool id="ligand3dgenerator" name="Ligand3DGenerator" version="0.94"> +<tool id="ligand3dgenerator" name="Ligand3DGenerator" version="0.95"> <description>generate 3D coordinates for small molecules</description> </tool> -<tool id="ligandfilesplitter" name="LigandFileSplitter" version="0.94"> +<tool id="ligandfilesplitter" name="LigandFileSplitter" version="0.95"> <description>split molecule files</description> </tool> -<tool id="molcombine" name="MolCombine" version="0.94"> +<tool id="modelcreator" name="ModelCreator" version="1.1"> + <description>create a QSAR model</description> +</tool> +<tool id="molcombine" name="MolCombine" version="0.95"> <description>combine molecular files</description> </tool> -<tool id="moldepict" name="MolDepict" version="0.94"> +<tool id="moldepict" name="MolDepict" version="0.95"> <description>create structure diagrams</description> </tool> <tool id="molfilter" name="MolFilter" version="0.9"> <description>filter molecule files</description> </tool> -<tool id="pdbcutter" name="PDBCutter" version="0.94"> +<tool id="molpredictor" name="MolPredictor" version="0.95"> + <description>predict molecule activities with QSAR model</description> +</tool> +<tool id="pdbcutter" name="PDBCutter" version="0.95"> <description>separate ligand and receptor</description> </tool> -<tool id="pdbdownload" name="PDBDownload" version="0.94"> +<tool id="pdbdownload" name="PDBDownload" version="0.95"> <description>retrieve pdb-file from pdb.org</description> </tool> -<tool id="partialchargescopy" name="PartialChargesCopy" version="0.94"> +<tool id="partialchargescopy" name="PartialChargesCopy" version="0.95"> <description>transfer part. charges between files</description> </tool> -<tool id="pocketdetector" name="PocketDetector" version="0.94"> +<tool id="pocketdetector" name="PocketDetector" version="0.95"> <description>detect binding pocket</description> </tool> -<tool id="propertymodifier" name="PropertyModifier" version="0.94"> +<tool id="predictor" name="Predictor" version="0.95"> + <description>predict activities with QSAR model</description> +</tool> +<tool id="propertymodifier" name="PropertyModifier" version="0.95"> <description>modify molecule property tags</description> </tool> -<tool id="propertyplotter" name="PropertyPlotter" version="0.94"> +<tool id="propertyplotter" name="PropertyPlotter" version="0.95"> <description>plot molecule properties</description> </tool> -<tool id="proteincheck" name="ProteinCheck" version="0.94"> +<tool id="proteincheck" name="ProteinCheck" version="0.95"> <description>quality check for proteins structures</description> </tool> -<tool id="proteinprotonator" name="ProteinProtonator" version="0.94"> +<tool id="proteinprotonator" name="ProteinProtonator" version="0.95"> <description>protonate protein structures</description> </tool> -<tool id="rmsdcalculator" name="RMSDCalculator" version="0.94"> +<tool id="rmsdcalculator" name="RMSDCalculator" version="0.95"> <description>calculate RMSD between poses</description> </tool> -<tool id="scoreanalyzer" name="ScoreAnalyzer" version="0.94"> +<tool id="scoreanalyzer" name="ScoreAnalyzer" version="0.95"> <description>generate ROC or enrichment plots</description> </tool> <tool id="similarityanalyzer" name="SimilarityAnalyzer" version="0.9"> <description>analyze similarity between molecule files</description> </tool> -<tool id="simplerescorer" name="SimpleRescorer" version="0.94"> +<tool id="simplerescorer" name="SimpleRescorer" version="0.95"> <description>rescore docking results</description> </tool> -<tool id="spatialconstraintdefiner" name="SpatialConstraintDefiner" version="0.94"> +<tool id="spatialconstraintdefiner" name="SpatialConstraintDefiner" version="0.95"> <description>define spatial constraint</description> </tool> -<tool id="tagres-train" name="TaGRes-train" version="0.94"> +<tool id="tagres-train" name="TaGRes-train" version="0.95"> <description>Target-specific Grid-Rescoring, training</description> </tool> -<tool id="tagres" name="TaGRes" version="0.94"> +<tool id="tagres" name="TaGRes" version="0.95"> <description>Target-specific Grid-Rescoring</description> </tool> -<tool id="vendorfinder" name="VendorFinder" version="0.94"> +<tool id="validator" name="Validator" version="0.95"> + <description>evaluate quality of a QSAR model</description> +</tool> +<tool id="vendorfinder" name="VendorFinder" version="0.95"> <description>search vendors for compounds</description> </tool> -<tool id="waterfinder" name="WaterFinder" version="0.94"> +<tool id="waterfinder" name="WaterFinder" version="0.95"> <description>find strongly bound waters</description> -</tool> -<tool id="automodel" name="AutoModel" version="1.1"> - <description>automatically find best QSAR model</description> -</tool> -<tool id="featureselector" name="FeatureSelector" version="1.1"> - <description>run feature-selection on a QSAR model</description> -</tool> -<tool id="inputpartitioner" name="InputPartitioner" version="1.1"> - <description>split QSAR data set</description> -</tool> -<tool id="inputreader" name="InputReader" version="1.1"> - <description>generate QSAR data set</description> -</tool> -<tool id="modelcreator" name="ModelCreator" version="1.1"> - <description>create a QSAR model</description> -</tool> -<tool id="molpredictor" name="MolPredictor" version="1.1"> - <description>predict molecule activities with QSAR model</description> -</tool> -<tool id="predictor" name="Predictor" version="1.1"> - <description>predict activities with QSAR model</description> -</tool> -<tool id="validator" name="Validator" version="1.1"> - <description>evaluate quality of a QSAR model</description> </tool></suite>