Mercurial > repos > marcel > caddsuite_linux_x86_64
view CADDSuite-1.0.1/galaxyconfigs/tools/EvenSplit.xml @ 9:2cff9609f2c7
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author | marcel |
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date | Tue, 15 Nov 2011 10:40:26 -0500 |
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<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> <tool id="evensplit" name="EvenSplit" version="1.0.1"> <description>generate splits w/ equal property range</description> <command interpreter="bash"><![CDATA[../../EvenSplit #if str( $i ) != '' and str( $i ) != 'None' : -i "$i" #end if #if str( $o1 ) != '' and str( $o1 ) != 'None' : -o1 "$o1" #end if #if str( $o2 ) != '' and str( $o2 ) != 'None' : -o2 "$o2" #end if #if str( $prop ) != '' and str( $prop ) != 'None' : -prop "$prop" #end if #if str( $n ) != '' and str( $n ) != 'None' : -n "$n" #end if #if str( $k ) != '' and str( $k ) != 'None' : -k "$k" #end if #if str( $offset ) != '' and str( $offset ) != 'None' : -offset "$offset" #end if | tail -n 5 ]]></command> <inputs> <param name="i" optional="false" label="input file" type="data" format="mol2/sdf/drf"/> <param name="prop" optional="false" label="property name" area="true" type="text" size="1x15" value="binding_free_energy"/> <param name="n" optional="true" label="Optional: max. number of compounds to use from input file" type="text" area="true" size="1x5" value=""/> <param name="k" optional="true" label="Optional: extract each k'th compound to 2nd output file" type="text" area="true" size="1x5" value="2"/> <param name="offset" optional="true" label="Optional: offset; extract each (i+offset)%k == 0 to 2nd output file" type="text" area="true" size="1x5" value="0"/> </inputs> <outputs> <data name="o1" format="mol2/sdf/drf" format_source="i"/> <data name="o2" format="mol2/sdf/drf" format_source="i"/> </outputs> <help>This tool splits a molecule file into two subsets in such a way that each of them convers an equal range of a property. The property with respect to which this is to be done should be specified with '-prop'.</help> </tool>