Mercurial > repos > marcel > caddsuite_linux_x86_64
view CADDSuite/changelog.txt @ 1:867bf9f815a0
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author | g2cmnty@test-web1.g2.bx.psu.edu |
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date | Sun, 26 Jun 2011 13:45:14 -0400 |
parents | bac3c274238f |
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Version 0.94, 06-27-2011: - Fixed tool-startup script for pathes containing whitespaces - New tool SpatialConstraintDefiner - New tool InteractionConstraintDefiner - Removed superficial pathes from startup-script - Slight change in ParamFile format (i.e. the files written with -write_par) - Renamed IMeedyDock to IMGDock Version 0.93, 05-30-2011: - Split Rescorer into 3 tools: SimpleRescorer, TaGRes-train, TaGRes (Target-Specific Grid-Rescoring) - Allow to optionally specify output filenames to LigandFileSplitter - Fixed creation of galaxy-scripts for tools with inputfile-lists - Fixed creation of galaxy-scripts for Converter and DockResultMerger - Automatically create and add all files necessary for integration of CADDSuite into Galaxy to the makeself archive - New tool MolFilter - Fixed some gnuplot issues - Added PDBDownload tool - Slight change of format of ParamFile - Added some missing tool-manuals - Disable B-factor check for hydrogens in ProteinCheck - Added safeguards to several tools - Automatically delete existing hydrogens from BALL-system before protonation is done by ProteinProtonator - Fixed reading of mulitple ScoreGridSets (for cases when no ini-file is used) - Simplified use of VendorFinder by allowing to set all db-parameters on the command-line (instead of using ini-file) - Enhanced several tool manuals - Let tools register their category (e.g. Preparation, Docking, etc.). Write and read information about this category to/from ParamFiles. Version 0.92, 05-17-2011: - Speed-up of ob-mol generation - Support build on Windows - ProteinCheck now generates protein-quality report as pdf - Added info about mandatory parameters and parameter-restrictions to parameter xml-file - Simplified use of DBImporter+DBExporter by allowing to set all db-parameters on the command-line (instead of using ini-file) - Simplified use of some other tools by merging several flags into one string-parameter that has restrictions. - New tool MolDepict. It generates structure diagrams for small molecules by using openbabel's svg-writer and merges them to one pdf-file (3 on 5). - Allow to create makeself-archive containing CADDSuite, all necessary contrib-libs, data-files and install-script - Write information about supported file-formats to parameter xml-file - new tool ProteinProtonator - new tool Ligand3DGenerator - new tool GalaxyConfigGenerator - allow to open file that do not have an extension (by searching for format-specific keywords) Version 0.91, 04-12-2011: - All tools now write a manual text to cout as well as to parameter xml-file (as generated by 'write_par) Version 0.9