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annotate CADDSuite-1.5/galaxyconfigs/tools/GalaxyConfigGenerator.xml @ 7:bfab27640f5e draft

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CADDSuite version 1.5
author Marcel Schumann <schumann.marcel@gmail.com>
date Tue, 24 Jul 2012 11:13:59 -0400
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1
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2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
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3 <tool id="galaxyconfiggenerator" name="GalaxyConfigGenerator" version="1.5">
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4 <description>generate galaxy tool-config files</description>
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5 <command interpreter="bash"><![CDATA[../../GalaxyConfigGenerator
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6 #if str( $i ) != '' and str( $i ) != 'None' :
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7 -i "$i"
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8 #end if
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9 #if str( $o ) != '' and str( $o ) != 'None' :
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10 -o "$o"
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11 #end if
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12 #if str( $ignore ) != '' and str( $ignore ) != 'None' :
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13 -ignore "$ignore"
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14 #end if
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15 #if str( $s ) != '' and str( $s ) != 'None' :
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16 -s "$s"
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17 #end if
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18 | tail -n 5
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19 ]]></command>
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20 <inputs>
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21 <param name="i" optional="false" label="input par-file" type="data" format="data"/>
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22 <param name="ignore" optional="true" label="Optional: tool-parameter to be ignored, i.e. those for which no galaxy config entry should be created" area="true" type="text" size="1x15"/>
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23 </inputs>
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24 <outputs>
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25 <data name="o" format="xml"/>
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26 <data name="s" format="data"/>
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27 </outputs>
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28 <help>This tool can be used to create galaxy tool-configuration files.
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29 As input, please supply a parameter-file as written by '-write_par' by all of our tools.</help>
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30 </tool>