|
5
|
1
|
|
|
2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
|
|
|
3 <tool id="pdbdownload" name="PDBDownload" version="1.0.1">
|
|
|
4 <description>retrieve pdb-file from pdb.org</description>
|
|
|
5 <command interpreter="bash"><![CDATA[../../PDBDownload
|
|
|
6 #if str( $id ) != '' and str( $id ) != 'None' :
|
|
|
7 -id "$id"
|
|
|
8 #end if
|
|
|
9 #if str( $o ) != '' and str( $o ) != 'None' :
|
|
|
10 -o "$o"
|
|
|
11 #end if
|
|
|
12 #if str( $p ) != '' and str( $p ) != 'None' :
|
|
|
13 -p "$p"
|
|
|
14 #end if
|
|
|
15 | tail -n 5
|
|
|
16 ]]></command>
|
|
|
17 <inputs>
|
|
|
18 <param name="id" optional="false" label="PDB ID for desired structure" area="true" type="text" size="1x15"/>
|
|
|
19 <param name="p" optional="true" label="Optional: proxy" area="true" type="text" size="1x15"/>
|
|
|
20 </inputs>
|
|
|
21 <outputs>
|
|
|
22 <data name="o" format="pdb"/>
|
|
|
23 </outputs>
|
|
|
24 <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.</help>
|
|
|
25 </tool> |
