Mercurial > repos > marcel > caddsuite_mac10_6
comparison CADDSuite/galaxyconfigs/tools/PDBDownload.xml @ 0:8ce0411aaeb3
Uploaded CADDSuite version 0.94
| author | marcel |
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| date | Sun, 26 Jun 2011 14:01:09 -0400 |
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| -1:000000000000 | 0:8ce0411aaeb3 |
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| 1 | |
| 2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> | |
| 3 <tool id="pdbdownload" name="PDBDownload" version="0.94"> | |
| 4 <description>retrieve pdb-file from pdb.org</description> | |
| 5 <command interpreter="bash"><![CDATA[../../PDBDownload | |
| 6 #if str( $id ) != '' and str( $id ) != 'None' : | |
| 7 -id "$id" | |
| 8 #end if | |
| 9 #if str( $o ) != '' and str( $o ) != 'None' : | |
| 10 -o "$o" | |
| 11 #end if | |
| 12 #if str( $p ) != '' and str( $p ) != 'None' : | |
| 13 -p "$p" | |
| 14 #end if | |
| 15 | tail -n 5 | |
| 16 ]]></command> | |
| 17 <inputs> | |
| 18 <param name="id" label="PDB ID for desired structure" optional="false" area="true" type="text" size="1x15"/> | |
| 19 <param name="p" label="proxy" optional="true" area="true" type="text" size="1x15"/> | |
| 20 </inputs> | |
| 21 <outputs> | |
| 22 <data name="o" format="pdb"/> | |
| 23 </outputs> | |
| 24 <help>Download a pdb-file from the pdb data bank (http://www.pdb.org/) using the specified ID of the desired protein structure.</help> | |
| 25 </tool> |