Mercurial > repos > marcel > caddsuite_mac10_6

comparison CADDSuite/galaxyconfigs/tools/DBImporter.xml @ 4:af446ca2d5c6

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author marcel
date Fri, 02 Sep 2011 08:54:17 -0400
parents bb26168c5715
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3:bb26168c5715 4:af446ca2d5c6
1 1
2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> 2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
3 <tool id="dbimporter" name="DBImporter" version="0.95 (ob)"> 3 <tool id="dbimporter" name="DBImporter" version="0.9.6 (ob)">
4 <description>import molecules into data base</description> 4 <description>import molecules into data base</description>
5 <command interpreter="bash"><![CDATA[../../DBImporter 5 <command interpreter="bash"><![CDATA[../../DBImporter
6 #if str( $i ) != '' and str( $i ) != 'None' : 6 #if str( $i ) != '' and str( $i ) != 'None' :
7 -i "$i" 7 -i "$i"
8 #end if
9 #if str( $o ) != '' and str( $o ) != 'None' :
10 -o "$o"
8 #end if 11 #end if
9 #if str( $target ) != '' and str( $target ) != 'None' : 12 #if str( $target ) != '' and str( $target ) != 'None' :
10 -target "$target" 13 -target "$target"
11 #end if 14 #end if
12 #if str( $d ) != '' and str( $d ) != 'None' : 15 #if str( $d ) != '' and str( $d ) != 'None' :
49 <param name="vn" optional="true" label="Optional: name of compound vendor" area="true" type="text" size="1x15"/> 52 <param name="vn" optional="true" label="Optional: name of compound vendor" area="true" type="text" size="1x15"/>
50 <param name="vid" optional="true" label="Optional: name of vendor's compound-ID tag in sd-file" area="true" type="text" size="1x15"/> 53 <param name="vid" optional="true" label="Optional: name of vendor's compound-ID tag in sd-file" area="true" type="text" size="1x15"/>
51 <param name="vd" optional="true" label="Optional: vendor library date or version" area="true" type="text" size="1x15"/> 54 <param name="vd" optional="true" label="Optional: vendor library date or version" area="true" type="text" size="1x15"/>
52 <param name="vu" optional="true" label="Optional: url from wich vendor library was obtained" area="true" type="text" size="1x15"/> 55 <param name="vu" optional="true" label="Optional: url from wich vendor library was obtained" area="true" type="text" size="1x15"/>
53 </inputs> 56 </inputs>
54 <outputs/> 57 <outputs>
58 <data name="o" format="data"/>
59 </outputs>
55 <help>This tool imports molecules into a database. 60 <help>This tool imports molecules into a database.
56 As input we need the file containing the molecules to be imported in sd-, mol2- or drf-format.</help> 61 As input we need the file containing the molecules to be imported in sd-, mol2- or drf-format.</help>
57 </tool> 62 </tool>