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comparison CADDSuite-1.5/galaxyconfigs/confFiles.py @ 7:bfab27640f5e draft

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CADDSuite version 1.5
author Marcel Schumann <schumann.marcel@gmail.com>
date Tue, 24 Jul 2012 11:13:59 -0400
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6:decca54699e3 7:bfab27640f5e
1 # -*- coding: utf-8 -*-
2 """
3 XML format classes
4 """
5 import data
6 import logging
7 from galaxy.datatypes.sniff import *
8 import commands
9
10 log = logging.getLogger(__name__)
11
12
13 class ini( data.Text ):
14 file_ext = "ini"
15 def sniff( self, filename ):
16 self.no_sections = commands.getstatusoutput("grep -c \"\[Docking-Settings\]\" "+filename)
17 if (self.no_sections[0] == 0) & (self.no_sections[1] > 0):
18 return True
19 else:
20 self.no_sections = commands.getstatusoutput("grep -c \"\[ReferenceArea\" "+filename)
21 if (self.no_sections[0] == 0) & (self.no_sections[1] > 0):
22 return True
23 else:
24 self.no_sections = commands.getstatusoutput("grep -c \"\[PharmacophoreConstraint\" "+filename)
25 if (self.no_sections[0] == 0) & (self.no_sections[1] > 0):
26 return True
27 else:
28 return False
29
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