comparison CADDSuite-1.1/galaxyconfigs/tools/GalaxyConfigGenerator.xml @ 6:decca54699e3

Uploaded Version 1.1
author marcel
date Thu, 12 Jan 2012 11:07:03 -0500
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5:e30a41af9d2b 6:decca54699e3
1
2 <!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.-->
3 <tool id="galaxyconfiggenerator" name="GalaxyConfigGenerator" version="1.1">
4 <description>generate galaxy tool-config files</description>
5 <command interpreter="bash"><![CDATA[../../GalaxyConfigGenerator
6 #if str( $i ) != '' and str( $i ) != 'None' :
7 -i "$i"
8 #end if
9 #if str( $o ) != '' and str( $o ) != 'None' :
10 -o "$o"
11 #end if
12 #if str( $ignore ) != '' and str( $ignore ) != 'None' :
13 -ignore "$ignore"
14 #end if
15 #if str( $s ) != '' and str( $s ) != 'None' :
16 -s "$s"
17 #end if
18 | tail -n 5
19 ]]></command>
20 <inputs>
21 <param name="i" optional="false" label="input par-file" type="data" format="data"/>
22 <param name="ignore" optional="true" label="Optional: tool-parameter to be ignored, i.e. those for which no galaxy config entry should be created" area="true" type="text" size="1x15"/>
23 </inputs>
24 <outputs>
25 <data name="o" format="xml"/>
26 <data name="s" format="data"/>
27 </outputs>
28 <help>This tool can be used to create galaxy tool-configuration files.
29 As input, please supply a parameter-file as written by '-write_par' by all of our tools.</help>
30 </tool>