Mercurial > repos > marcel > caddsuite_mac10_6

comparison CADDSuite-1.6/galaxyconfigs/confFiles.py @ 10:eda78e0f5df6 draft default tip

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author marcel
date Sun, 30 Nov 2014 03:46:08 -0500
parents 488032d372e1
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9:488032d372e1 10:eda78e0f5df6
1 # -*- coding: utf-8 -*-
2 """
3 XML format classes
4 """
5 import data
6 import logging
7 from galaxy.datatypes.sniff import *
8 import commands
9
10 log = logging.getLogger(__name__)
11
12
13 class ini( data.Text ):
14 file_ext = "ini"
15 def sniff( self, filename ):
16 self.no_sections = commands.getstatusoutput("grep -c \"\[Docking-Settings\]\" "+filename)
17 if (self.no_sections[0] == 0) & (self.no_sections[1] > 0):
18 return True
19 else:
20 self.no_sections = commands.getstatusoutput("grep -c \"\[ReferenceArea\" "+filename)
21 if (self.no_sections[0] == 0) & (self.no_sections[1] > 0):
22 return True
23 else:
24 self.no_sections = commands.getstatusoutput("grep -c \"\[PharmacophoreConstraint\" "+filename)
25 if (self.no_sections[0] == 0) & (self.no_sections[1] > 0):
26 return True
27 else:
28 return False
29
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