Mercurial > repos > marcel > caddsuite_mac10_6
diff CADDSuite-1.6/galaxyconfigs/tools/PropertyPlotter.xml @ 8:dbb480e39d95 draft
Uploaded
author | marcel |
---|---|
date | Sat, 15 Dec 2012 13:15:46 -0500 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CADDSuite-1.6/galaxyconfigs/tools/PropertyPlotter.xml Sat Dec 15 13:15:46 2012 -0500 @@ -0,0 +1,35 @@ + +<!--This is a configuration file for the integration of a CADDSuite tool into Galaxy (http://usegalaxy.org). This file was automatically generated using GalaxyConfigGenerator, so do not bother to make too many manual modifications.--> +<tool id="propertyplotter" name="PropertyPlotter" version="1.6"> + <description>plot molecule properties</description> + <command interpreter="bash"><![CDATA[../../PropertyPlotter +#if str( $i ) != '' and str( $i ) != 'None' : + -i "$i" +#end if +#if str( $p1 ) != '' and str( $p1 ) != 'None' : + -p1 "$p1" +#end if +#if str( $p2 ) != '' and str( $p2 ) != 'None' : + -p2 "$p2" +#end if +#if str( $o ) != '' and str( $o ) != 'None' : + -o "$o" +#end if +-quiet + | tail -n 5 +]]></command> + <inputs> + <param name="i" optional="false" label="input file" type="data" format="mol2/sdf/drf"/> + <param name="p1" optional="false" label="name of property 1" area="true" type="text" size="1x15"/> + <param name="p2" optional="true" label="Optional: name of property 2" area="true" type="text" size="1x15"/> + </inputs> + <outputs> + <data name="o" format="png"/> + </outputs> + <help>PropertyPlotter can be used to generate distribution- or scatter-plots of data contained in molecule property-tags. + +In case you want to create a scatter-plot, specify the name of both property-tags to be used with '-p1' and '-p2'. If you want to generate a distribution plot, just specify '-p1'. +The output graphic will created by use of gnuplot, so make sure to have it installed and in your PATH environment variable. + +The output of this tool is a plot in form of an eps or png-file (as chosen).</help> +</tool> \ No newline at end of file