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author | marcel |
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date | Sat, 15 Dec 2012 13:16:40 -0500 |
parents | dbb480e39d95 |
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###################################################################### # Copyright OELIB: OpenEye Scientific Software, Santa Fe, # U.S.A., 1999,2000,2001 # Copyright JOELIB/JOELib2: Dept. Computer Architecture, University of # Tuebingen, Germany, 2001,2002,2003,2004,2005 # Copyright JOELIB/JOELib2: ALTANA PHARMA AG, Konstanz, Germany, # 2003,2004,2005 # # Authors: Stephen Jelfs # Joerg Kurt Wegner, me@cheminformatics.eu # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation version 2 of the License. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. ###################################################################### # MR Atomic Contributions # ref. Wildman, S.A. and Crippen, G.M., J. Chem. Inf. Comput. # Sci., 1999, 39, 868-873. # Table below is adapted from above ref. ###################################################################### ;hydrogen [*] 1.112 [#6] 1.057 [#1] 1.057 [O][CX4] 1.395 [O]c 1.395 [O][#5] 1.395 [O][#14] 1.395 [O][#15] 1.395 [O][#33] 1.395 [O][#50] 1.395 [#5] 1.395 [#14] 1.395 [#15] 1.395 [#16] 1.395 [#50] 1.395 [#7] 0.9627 [O][#7] 0.9627 [O]C=[#6] 1.805 [O]C=[#7] 1.805 [O]C=O 1.805 [O]C=S 1.805 [O]O 1.805 [O]S 1.805 ;heavy [*] 0 [#6] 3.243 [CH4] 2.503 [CH3]C 2.503 [CH2](C)C 2.503 [CH](C)(C)C 2.433 [C](C)(C)(C)C 2.433 [CH3][O,N,F,Cl,Br,#15,#16,#53;!a] 2.753 [CH2X4][O,N,F,Cl,Br,#15,#16,#53;!a] 2.753 [CHX4][O,N,F,Cl,Br,#15,#16,#53;!a] 2.731 [CH0X4][O,N,F,Cl,Br,#15,#16,#53;!a] 2.731 [C]=[A!#6] 5.007 [CH2]=C 3.513 [CH1](=C)A 3.513 [CH0](=C)(A)A 3.513 [C](=C)=C 3.513 [CX2]#A 3.888 [CH3]c 2.464 [CH3][a!#6] 2.412 [CH2X4]a 2.488 [CHX4]a 2.582 [CH0X4]a 2.576 [c][#5,#14,#15,#33,#34,#50,#80] 4.041 [c][#9] 3.257 [c][#17] 3.564 [c][#35] 3.18 [c][#53] 3.104 [cH] 3.35 [c](:a)(:a):a 4.346 [c](:a)(:a)-a 3.904 [c](:a)(:a)-C 3.509 [c](:a)(:a)-N 4.067 [c](:a)(:a)-O 3.853 [c](:a)(:a)-S 2.673 [c](:a)(:a)=C 3.135 [c](:a)(:a)=N 3.135 [c](:a)(:a)=O 3.135 [C](=C)(a)A 4.305 [C](=C)(c)a 4.305 [CH](=C)a 4.305 [C]=c 4.305 [CX4][!#6;!#7;!#8;!#9;!#15;!#16;!#17;!#35;!#53] 2.693 [#7] 2.134 [NH2+0]A 2.262 [NH+0](A)A 2.173 [NH2+0]a 2.827 [NH+0](A)a 3 [NH+0](a)a 3 [NH+0]=A 1.757 [NH+0]=a 1.757 [N+0](=A)A 2.428 [N+0](=A)a 2.428 [N+0](=a)A 2.428 [N+0](=a)a 2.428 [N+0](A)(A)A 1.839 [N+0](a)(A)A 2.819 [N+0](a)(a)A 2.819 [N+0](a)(a)a 2.819 [N+0]#A 1.725 [NH3+*] 2.134 [NH2+*] 2.134 [NH+*] 2.134 [n+0] 2.202 [n+*] 2.134 [NH0+*](A)(A)(A)A 0.2604 [NH0+*](=A)(A)A 0.2604 [NH0+*](=A)(A)a 0.2604 [NH0+*](=[#6])=[#7] 0.2604 [N+*]#A 3.359 [N-*] 3.359 [N+*](=[N-*])=N 3.359 [#8] 0.6865 [o] 1.08 [OH] 0.8238 [OH2] 0.8238 [O](C)C 1.085 [OH0](C)[A!#6] 1.085 [OH0]([A!#6])[A!#6] 1.085 [O](A)a 1.182 [O](a)a 1.182 [O]=[#8] 3.367 [O]=[#7] 3.367 [OX1-*][#7] 3.367 [OX1-*][#16] 0.7774 [OX1-*][#15;#33;#43;#53] 0 [O]=c 3.135 [O]=[CH]C 0 [O]=C(C)C 0 [O]=[CH0](C)[A;!6] 0 [O]=[CH]N 0 [O]=[CH]O 0 [O]=[CH2] 0 [O]=[CX2]=O 0 [O]=[CH]c 0.2215 [O]=C(C)c 0.2215 [O]=C(c)c 0.2215 [O]=[CH0](c)[a!#6] 0.2215 [O]=[CH0](c)[A!#6] 0.2215 [O]=[CH0](C)[a!#6] 0.2215 [O]=C([A!#6])[A!#6] 0.389 [O]=C([A!#6])[a!#6] 0.389 [O]=C([a!#6])[a!#6] 0.389 [O-1]C(=O) 0.6865 [#9-0] 1.108 [#17-0] 5.853 [#35-0] 8.927 [#53-0] 14.02 [#9-*] 1.108 [#17-*] 5.853 [#35-*] 8.927 [#53-*] 14.02 [#53+*] 14.02 [#15] 6.920 [S-0] 7.591 [S-*] 7.365 [S+*] 7.365 [s] 6.691 [B,Si,Ga,Ge,As,Se,Sn,Te,Pb,Nc,Nr,Kr,Xe,Rn] 5.754